PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462922698
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 302aa    MW: 32100.4 Da    PI: 9.0749
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462922698genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-1195141555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h    + RR+++++  + Lr++lP +    s+K +Ka+iL +Av+YIk Lq
  462922698  95 HILTKKERRKEMKNMHNDLRSILPGL----SQKADKATILGEAVNYIKTLQ 141
                6666799******************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.95190140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1393149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1295147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.60E-1095145No hitNo description
PfamPF000107.4E-996141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-896146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSDEGTKPPQ DVKGSSLGAV GFAGMAGSGF GFTSAKPTVD NTTAGLKLTS PVINTPQEVH  60
GSHDVTTSSH GKATPTGGGS SKRKGATMEA EHTLHILTKK ERRKEMKNMH NDLRSILPGL  120
SQKADKATIL GEAVNYIKTL QDNIAQQLVQ LGLSVAHLPS VRHGTAAPTA GELIMADMFQ  180
SLNAQQTAGS SVMPRIAVNM SPSAGPFQTL SGPNVAVSVT GDDDGFINVC TPRQYSLMKI  240
VCSVLEKHRI DLVRADISSD KYQSKISIHA RINSASAHFL EDMTAEDRYK LAVSEMVRSF  300
AN
Cis-element ? help Back to Top
SourceLink
PlantRegMap462922698
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9J7H92e-54A0A0A9J7H9_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-21bHLH family protein