PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923139
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 260aa    MW: 28311.8 Da    PI: 5.8094
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923139genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY41.33e-13951391758
                T-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY  17 gsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                +++f r+YYrCt++   gC ++k+++r++edp ++++ Y g+H++
  462923139  95 NQKFCRGYYRCTHKhsqGCAATKQLQRTDEDPALFDVFYVGTHTC 139
                6899*********98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031064.9E-1388139IPR003657WRKY domain
SMARTSM007746.0E-994141IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-1394140IPR003657WRKY domain
SuperFamilySSF1182907.45E-1294139IPR003657WRKY domain
PROSITE profilePS5081111.44100137IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MENIDSNGGC RLVVTELSHI KDLVLQLEVH LDGSPDLCRH LTAKIVTLTE RSIGIITSSD  60
FESSRKRYAA DAGVASPTPR TPGTKKRKMM EKRTNQKFCR GYYRCTHKHS QGCAATKQLQ  120
RTDEDPALFD VFYVGTHTCV HKTETERKPE SHNLPENLSA SLTVKTDGLA PAEEPQSVSA  180
TTHFSFPLSA ALTPGSMAVT PPTSDSNDVV ASFSPFEWRA QTELDEVVSA LVAASTPSVP  240
AADIAVDEFL DIDAISSFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17887PRTPGTKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956613.15e-71probable WRKY transcription factor 70
TrEMBLA0A1D8F0I24e-70A0A1D8F0I2_9POAL; WRKY74-1 protein
STRINGSi030528m2e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.26e-19WRKY family protein