PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923169
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 177aa    MW: 19039.6 Da    PI: 7.1512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923169genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003285104120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++C+ Cgk+F++   L  H 
  462923169  85 HECHVCGKTFPTGQALGGHK 104
                79*********988887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-1384109IPR007087Zinc finger, C2H2
SuperFamilySSF576673.58E-684109No hitNo description
PROSITE profilePS5015710.09785107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAVEAILDAS ATVTSSEEEV EDEGWAKRKR TRRRRNKRDA PPQLPREPTE EEYLALCLLT  60
LRRDVPAPAP AGDLLHACSA SAAAHECHVC GKTFPTGQAL GGHKRCHYDG TVGSAAAPPP  120
ANKQHHQKQG GRVATGFDLN LPALPDVVAA ERCAAPDEDQ EVLSPLAFKK PRLMIPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13138RRRRNKRD
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923169
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557426e-43EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963019.14e-38zinc finger protein 1
TrEMBLK3Z8Z39e-37K3Z8Z3_SETIT; Uncharacterized protein
STRINGSi023013m2e-37(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-16salt tolerance zinc finger