PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923252
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 259aa    MW: 28533.4 Da    PI: 6.1728
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923252genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS248.82.1e-76302502232
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshltaNq 100
                 +lLl+cAeav++++l  a+++L  + ela+p g+++qR+aayf+eA++arl++s+ +ly+ lpp + +  +  ++++aa+++f+ +sP++kfsh+taNq
  462923252  30 LTLLLQCAEAVNADNLDDAHQTLLSIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPASPAAARlGTRVAAAFQVFNGISPFVKFSHFTANQ 129
                579************************************************************766665555599999********************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s ++le+tg+rL++fA++lg+pfef + va++  ++++e+L v ++E
  462923252 130 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMDALEATGKRLSDFADTLGLPFEFCA-VAEKAGNVDPEKLGVTRRE 224
                *************************************************....***************************.7****************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvk 232
                a+aV++ +  h+l+d ++s ++    +L+l++
  462923252 225 AVAVHWLH--HSLYDVTGSDSN----TLWLIQ 250
                *******9..999988888887....776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.9223259IPR005202Transcription factor GRAS
PfamPF035147.4E-7430250IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MFHFDGFFVF KERKEEERRK QRDEEGLHLL TLLLQCAEAV NADNLDDAHQ TLLSIAELAT  60
PFGTSTQRVA AYFAEAMSAR LVSSCLGLYA PLPPASPAAA RLGTRVAAAF QVFNGISPFV  120
KFSHFTANQA IQEAFEREDR VHIIDLDIMQ GLQWPGLFHI LASRPGGPPR VRLTGLGASM  180
DALEATGKRL SDFADTLGLP FEFCAVAEKA GNVDPEKLGV TRREAVAVHW LHHSLYDVTG  240
SDSNTLWLIQ RHQLSTSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-126132513240Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923252
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0636820.0BT063682.1 Zea mays full-length cDNA clone ZM_BFc0094J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168484.11e-159protein SCARECROW
SwissprotQ9FUZ71e-160SCR_MAIZE; Protein SCARECROW
TrEMBLA0A1Q0YY061e-157A0A1Q0YY06_MAIZE; Scarecrow1
TrEMBLA0A3L6F9E11e-157A0A3L6F9E1_MAIZE; Protein SCARECROW
STRINGSb05g001500.11e-159(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-110GRAS family protein
Publications ? help Back to Top
  1. Lim J, et al.
    Conservation and diversification of SCARECROW in maize.
    Plant Mol. Biol., 2005. 59(4): p. 619-30
    [PMID:16244911]