PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923258
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 95aa    MW: 9980.52 Da    PI: 9.4258
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923258genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS79.65.5e-25388288374
       GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ++l+rei+nv+a  g +r  + + +++Wre+l ++GF++++l  +aa+qa+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  462923258   3 VCLSREIRNVLAVGGPARSGDVK-FGSWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 88 
                699**************988887.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.003168IPR005202Transcription factor GRAS
PfamPF035141.9E-22388IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MPVCLSREIR NVLAVGGPAR SGDVKFGSWR EKLAQSGFRA ASLAGSAAAQ ASLLLGMFPS  60
DGYTLVEENG ALKLGWKDLC LLTASAWRPI QTSVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-42589296380Protein SCARECROW
5b3h_A7e-42589295379Protein SCARECROW
5b3h_D7e-42589295379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923258
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945102e-78FP094510.1 Phyllostachys edulis cDNA clone: bphylf057n24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317511.12e-52protein SCARECROW
SwissprotQ9FUZ73e-53SCR_MAIZE; Protein SCARECROW
TrEMBLA0A0E0BMX41e-52A0A0E0BMX4_9ORYZ; Uncharacterized protein
TrEMBLA0A1Z5RG855e-51A0A1Z5RG85_SORBI; Uncharacterized protein
TrEMBLC0P5W33e-52C0P5W3_MAIZE; Uncharacterized protein
STRINGOGLUM12G01020.12e-53(Oryza glumipatula)
STRINGSb05g001500.17e-52(Sorghum bicolor)
STRINGGRMZM2G131516_P021e-51(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.19e-33GRAS family protein
Publications ? help Back to Top
  1. Lim J, et al.
    Conservation and diversification of SCARECROW in maize.
    Plant Mol. Biol., 2005. 59(4): p. 619-30
    [PMID:16244911]