PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923282
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 546aa    MW: 59292.3 Da    PI: 8.0066
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923282genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.3e-0723413856
               TS-HHHHHHHHHHHHHHHH CS
   Homeobox 38 gLterqVkvWFqNrRakek 56
               gL  rqVk+WFqNrR+++k
  462923282 23 GLAPRQVKFWFQNRRTQMK 41
               7999************999 PP
2START136.62.6e-4316628494206
                EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
      START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                m+aelq+lsplvp R+++f+R+++qlg+g w++vdvS+d  ++++++    +++ v++++lpSg+++++++ng++kvtwveh++++++++h l+r+l++s
  462923282 166 MKAELQVLSPLVPiREVTFLRFCKQLGQGAWAVVDVSIDglVRDQNSAttsTAGKVKCRRLPSGCVMQDTPNGYCKVTWVEHTEYDEASVHHLYRPLLRS 265
                899***********************************85423333334679************************************************ PP

                HHHHHHHHHHHHTXXXXXX CS
      START 188 glaegaktwvatlqrqcek 206
                gla+ga++w+atlqrqce+
  462923282 266 GLAFGARRWLATLQRQCEC 284
                *****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000869.93E-71343No hitNo description
SuperFamilySSF466891.54E-61447IPR009057Homeodomain-like
PfamPF000465.6E-52341IPR001356Homeobox domain
PROSITE profilePS500719.752343IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-72350IPR009057Homeodomain-like
SMARTSM002342.5E-1237284IPR002913START domain
PfamPF018526.3E-38166284IPR002913START domain
SuperFamilySSF559611.65E-20169284No hitNo description
PROSITE profilePS5084827.299172287IPR002913START domain
SuperFamilySSF559611.15E-20313540No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MDGVVTGLLR ACRLFKECPH PDGLAPRQVK FWFQNRRTQM KTQLERHENA LLKQENDKLR  60
AENMTIRDAM RSPIPAMLGE ASLEEQHLRI ENARLKDELN RVYALATKFL GKPISFLTGY  120
QPQSLLSTMP MPSSALELAV GGLGGMGGSM PPATMPGTMS DFAGGMKAEL QVLSPLVPIR  180
EVTFLRFCKQ LGQGAWAVVD VSIDGLVRDQ NSATTSTAGK VKCRRLPSGC VMQDTPNGYC  240
KVTWVEHTEY DEASVHHLYR PLLRSGLAFG ARRWLATLQR QCECLAILMS PDTVSAKDSI  300
VITQEGKRSM LKLARRMTEN FCAGVSASSA REWSNLDSGA AGSIGEDVRV MERKSVNEPG  360
EPPGVVLSAA TSVWVPVAPE KLFNFLRDER LRAEWDILSN GGPMQKMTNI AKGQEHGNSV  420
TLLRASAMSA NQSSMSSMLI LQETCTDASG SMVVYAPVDI PAMQLVMNGG DSTYVALLPS  480
GFAILPDGPS IDSAGQKTGG SLLTVAFQIL VNSQPTAKLT VESVETVNNL ISCTIKKIKN  540
ALQCDP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923282
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632490.0BT063249.1 Zea mays full-length cDNA clone ZM_BFc0042P14 mRNA, complete cds.
GenBankBT0644530.0BT064453.1 Zea mays full-length cDNA clone ZM_BFc0170E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457484.10.0homeobox-leucine zipper protein ROC5
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A3L6SNG90.0A0A3L6SNG9_PANMI; Homeobox-leucine zipper protein ROC5-like isoform X2
STRINGOMERI02G26100.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-174homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]