PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923647
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 196aa    MW: 20887.4 Da    PI: 10.2257
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923647genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86e-30132190259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+++WrKYGqK++kgs+fpr+YYrC+s  gCp++k+ver+a dp ++++tYe +H+h+
  462923647 132 ADEWSWRKYGQKPIKGSPFPRGYYRCSSVkGCPARKHVERDAADPATLIVTYEADHRHD 190
                69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-32124192IPR003657WRKY domain
PROSITE profilePS5081132.363126192IPR003657WRKY domain
SuperFamilySSF1182901.7E-25127192IPR003657WRKY domain
SMARTSM007741.5E-34131191IPR003657WRKY domain
PfamPF031065.1E-25133189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVDFEAKEAA AAGLRSLELL ASSLSPTPQA EHQPQPLGQI ADQAVSRFRR VINLLDRTGH  60
ARFRRAPPAA VQTESPPASP RPAPSPAPPV VVSQPAAPLM SLTLDFTKXR VPAPSAAASG  120
GVGASSRADI PADEWSWRKY GQKPIKGSPF PRGYYRCSSV KGCPARKHVE RDAADPATLI  180
VTYEADHRHD APAVKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-24116193278Probable WRKY transcription factor 4
2lex_A6e-24116193278Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923647
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046486e-68AP004648.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_H02.
GenBankAP0149646e-68AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCT8359586e-68CT835958.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI102B05, full insert sequence.
GenBankCT8359596e-68CT835959.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI103A11, full insert sequence.
GenBankCT8419366e-68CT841936.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103L12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391036.13e-44PREDICTED: WRKY transcription factor WRKY51-like
RefseqXP_009394583.22e-44PREDICTED: WRKY transcription factor WRKY51-like isoform X2
SwissprotQ6IEN13e-33WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLM8AF295e-45M8AF29_TRIUA; Putative WRKY transcription factor 15
STRINGOMERI04G19410.12e-55(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.19e-33WRKY DNA-binding protein 11