PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923656
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 254aa    MW: 27561.4 Da    PI: 8.2603
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923656genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde+l  +v+q+G g +W + +++ g++R++k+c++rw++yl
        462923656 14 RGPWSPEEDERLRSYVQQHGIGgNWISLPQKAGLNRCGKSCRLRWLNYL 62
                     89******************999************************97 PP
2Myb_DNA-binding31.83.2e-1071118446
                      S-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46 
                       T++Ed ++  +    G++       W+ Ia++++ gRt++++k++w++
        462923656  71 YTEQEDHIICSLYSSIGSRcvalpvAWSIIASKLP-GRTDNDVKNYWNT 118
                      69*********************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.176966IPR017930Myb domain
SuperFamilySSF466892.51E-2511116IPR009057Homeodomain-like
SMARTSM007177.3E-121364IPR001005SANT/Myb domain
PfamPF002495.1E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-251569IPR009057Homeodomain-like
CDDcd001677.35E-101662No hitNo description
PROSITE profilePS5129410.94267124IPR017930Myb domain
SMARTSM007178.2E-667122IPR001005SANT/Myb domain
PfamPF002497.5E-969118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-1970123IPR009057Homeodomain-like
CDDcd001672.37E-671118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDERLRSYVQ QHGIGGNWIS LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDHIIC SLYSSIGSRC VALPVAWSII ASKLPGRTDN DVKNYWNTKL  120
KKKAMAAATS PALSPASSSV TSSPSCDGRF ATAFPQPQGL IRFDAPAAPP CRSRTELAPV  180
PPAAVALDGG DVFLHELVGG DQPLFSYGDF FAGLQPQDRA LQELSACYFP NMAEMWGAAD  240
HAHAKPQGLC NTLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23141247108B-MYB
1h8a_C8e-231112424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794301e-108HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654754.11e-113PREDICTED: transcription factor RAX1-like
TrEMBLA0A3L6T1M01e-113A0A3L6T1M0_PANMI; Transcription factor RAX2-like
STRINGOB05G32650.11e-113(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.17e-64myb domain protein 84