PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923718
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 148aa    MW: 16842 Da    PI: 4.7516
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923718genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1195.9e-372146227373
       GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                +Lk +++l P +vvvve++ad ++++ + r+  a+++++  +d++++ lp+ se+r+++E+e +g++++nv+a+eg er+er+e  ++W +r+++aGF++
  462923718   2 LLKSIRTLDPALVVVVEEDADFTAGDVVGRLRAAFNFMWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVERVERQEDRARWGQRMRSAGFRA 100
                699***********************************************************.************************************* PP

       GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                v+++e++a ++k++l++++  g+ ++ e++ lvl+Wk++++v++SaW
  462923718 101 VAFNEETAGEVKAMLNEHA-AGWGMKREDDDLVLTWKGHNVVFASAW 146
                *******************.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.9771128IPR005202Transcription factor GRAS
PfamPF035142.0E-342146IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MLLKSIRTLD PALVVVVEED ADFTAGDVVG RLRAAFNFMW IPYDAVDTFL PKGSEQRRWY  60
EAEVGWKVEN VLAQEGVERV ERQEDRARWG QRMRSAGFRA VAFNEETAGE VKAMLNEHAA  120
GWGMKREDDD LVLTWKGHNV VFASAWAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B4e-162148264420Protein SHORT-ROOT
5b3h_E4e-162148264420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923718
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676931e-160BT067693.1 Zea mays full-length cDNA clone ZM_BFc0127K06 mRNA, complete cds.
GenBankKJ7279411e-160KJ727941.1 Zea mays clone pUT6037 GRAS transcription factor (GRAS11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460950.12e-98scarecrow-like protein 32
SwissprotQ9SN223e-60SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1E5V0372e-97A0A1E5V037_9POAL; Scarecrow-like protein 32
TrEMBLA0A2T7EY271e-97A0A2T7EY27_9POAL; Uncharacterized protein
STRINGPavir.J04428.1.p8e-99(Panicum virgatum)
STRINGSb02g038040.17e-98(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-62GRAS family protein