PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923938
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 368aa    MW: 40065 Da    PI: 5.1722
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923938genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS270.46e-83236725374
       GRAS  25 arlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaNqaIleavegeervHiiDfdisqGl 123
                + l+elasp+gd  q+la+yf+++L arl+ s++++ ++l + ++++ +s +++  + l f+e+sP+  f+h++aN aIle++ ++        + + ++
  462923938   2 WMLNELASPYGDLEQKLASYFLQGLFARLTASGPRTLRTLVSASDRN-TSFDSTRRTALrFQELSPWSSFGHVAANGAILESFLEAASS---SPSNTFCT 97 
                789************************************98888874.444444444446***********************999665...46999*** PP

       GRAS 124 QWpaLlqaLasRp.egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldes 217
                QWp+Ll+aLa+R+ +++p+l +T+v+s++s   ++ ++e+g+r++kfA+ +gvpf f+ +++  +l+dl+le+L   +     alaVn+v +l  +    
  462923938  98 QWPTLLEALATRSaDDTPHLSLTTVVSSASApAQRVMREIGQRMEKFARLMGVPFTFRSVHHAgDLADLDLESLVGLHgegTTALAVNCVNSLRGVA-PA 196
                *************889***********888889999***********************97767*********96666233669*********9997.66 PP

       GRAS 218 vsleserdevLklvkslsPkvvvvveqeadh.nse.........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                ++ + +rd++  ++++l P+vv+vve+ead+   e          Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ e
  462923938 197 GPGARRRDAFAAALRRLDPRVVTVVEEEADLvA-EedggdsseaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESME 294
                666667**********************99844.4478888888*************************************.****************** PP

       GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee......sgslv.lgWkdrpLvsvSaWr 374
                r+et+++W +r+++aGF+pv++se++a+++++llr++  +g+++ e        gs v l Wk++pLv++SaWr
  462923938 295 RRETAASWARRMRAAGFSPVAFSEDVADDVRSLLRRYR-EGWSMREAgaddsaAGSGVfLAWKEQPLVWASAWR 367
                **************************************.88888866666666555555**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.7681341IPR005202Transcription factor GRAS
PfamPF035142.1E-802367IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MWMLNELASP YGDLEQKLAS YFLQGLFARL TASGPRTLRT LVSASDRNTS FDSTRRTALR  60
FQELSPWSSF GHVAANGAIL ESFLEAASSS PSNTFCTQWP TLLEALATRS ADDTPHLSLT  120
TVVSSASAPA QRVMREIGQR MEKFARLMGV PFTFRSVHHA GDLADLDLES LVGLHGEGTT  180
ALAVNCVNSL RGVAPAGPGA RRRDAFAAAL RRLDPRVVTV VEEEADLVAE EDGGDSSEAA  240
FLKVFGEGLR FFSAYMDSLE ESFPKTSNER LALERGAGRA IVDLVSCPAS ESMERRETAA  300
SWARRMRAAG FSPVAFSEDV ADDVRSLLRR YREGWSMREA GADDSAAGSG VFLAWKEQPL  360
VWASAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-1471368110474Protein SHORT-ROOT
5b3h_B1e-148136856420Protein SHORT-ROOT
5b3h_E1e-148136856420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923938
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209591e-156AK120959.1 Oryza sativa Japonica Group cDNA clone:J023039J21, full insert sequence.
GenBankAP0039851e-156AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0054371e-156AP005437.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1113_E01.
GenBankAP0149631e-156AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-156CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176974.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A3L6DWN30.0A0A3L6DWN3_MAIZE; Protein SHORT-ROOT 1
STRINGTraes_2BS_736EF207B1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-123GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]