PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462924093
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 186aa    MW: 19349.8 Da    PI: 8.5828
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462924093genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26059.77.9e-193777141
     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasn 41
               +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasn
  462924093 37 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASN 77
               7**************************************98 PP
2DUF26029.52e-09771126499
     DUF260  64 eAearardPvyGavgvilklqqqleqlkaelallke 99 
                +A++r+rdPvyG+vgvi+ lq++l+ql+++la++k 
  462924093  77 NADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKY 112
                69*****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.70536135IPR004883Lateral organ boundaries, LOB
PfamPF031959.6E-183777IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-777110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MASSSASSMP APSGSVITVA TSSSSAAAAA VCGTGSPCAA CKFLRRKCQP DCVFAPYFPP  60
DNPQKFVHVH RVFGASNADM RLRDPVYGCV GVISILQHNL RQLQQDLARA KYELSKYQDQ  120
FASAQMLSRS YDGEPIARLG INGGYEFGYS TSMGGAGPVS GLGTLGLSPF LKSGTAGGDE  180
KPSAGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-34271171114LOB family transfactor Ramosa2.1
5ly0_B3e-34271171114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462924093
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9406813e-66AY940681.1 Zea mays ASYMMETRIC LEAVES2 mRNA, complete cds.
GenBankEF0814543e-66EF081454.1 Zea mays indeterminate gametophyte 1 (IG1) gene, complete cds.
GenBankEU9648173e-66EU964817.1 Zea mays clone 281759 mRNA sequence.
GenBankEU9660923e-66EU966092.1 Zea mays clone 291632 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105838.11e-98LOB domain-containing protein 6
RefseqXP_008673456.11e-98LOB domain-containing protein 6 isoform X1
RefseqXP_020405662.11e-98LOB domain-containing protein 6 isoform X1
SwissprotQ32SG31e-99LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A2T7DDD61e-104A0A2T7DDD6_9POAL; Uncharacterized protein
TrEMBLA0A3L6RGB01e-104A0A3L6RGB0_PANMI; LOB domain-containing protein 6
STRINGGRMZM2G118250_P064e-98(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.18e-37ASYMMETRIC LEAVES 2-like 1