PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462924164
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 271aa    MW: 29324.7 Da    PI: 6.7505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462924164genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-16108154455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  462924164 108 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 154
                6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.27E-18100158No hitNo description
SuperFamilySSF474599.81E-21101164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-20101164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.063104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-14108154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-18110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MHEQGLGGFG GSRAAVQGHG GRDAMLFLQQ HHHQQQQRQQ QQLEEAEEEE ARRQMFAGVA  60
FPGALGYGHQ AEEAGGLGDS DAGGSEPEPA PSRARGGSGS KRSRAAEVHN LSEKRRRSRI  120
NEKMKALQSL IPNSNKTDKA SMLDEAIEYL KQLQLQVQML SMRNGVYLNP PYLSGALEAA  180
HASQMFAALG GGNITGPSSG AAMLPVNQSS GAQHQAFEPL NPPPQNQQAT LILPSVPDKT  240
IPEPPFHLES SQSHLRSFQM PESSEVIRLR E
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462924164
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353601e-117BT035360.1 Zea mays full-length cDNA clone ZM_BFb0057H06 mRNA, complete cds.
GenBankKJ7268601e-117KJ726860.1 Zea mays clone pUT3401 bHLH transcription factor (bHLH125) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811540.11e-116uncharacterized protein LOC112889235 isoform X1
TrEMBLA0A2T7E2L41e-115A0A2T7E2L4_9POAL; Uncharacterized protein
STRINGPavir.J38250.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-35bHLH family protein