PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462924325

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 722aa MW: 81616.1 Da PI: 8.862

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462924325	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	391.4	9.9e-120	347	718	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++ L++cA+av+++d + a++lL+++++++ p+gd +qRla++f+ +L+ar+a+++s+ly++l +++t+ s+ l+a++l+ ++P+ ++sh++ Nq 462924325 347 LRTILIHCAQAVAADDRRTANELLKQIRQHSKPNGDGTQRLAHCFADGLEARMAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRLSHFLSNQ 443 5789**********************************************************999999...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +Il ++++++vHiiDf+i GlQWp+L++ L++R++gpp lRiTg++ p++g +e++eetg rLa++A++++vpfe++ +a+++e++++e+L+v + 462924325 444 TILSMTKNATKVHIIDFGIYFGLQWPCLIRRLSKREGGPPILRITGIDVPQPGfrPSERIEETGLRLAEYARKFDVPFEYQG-IASKWETIRVEDLKVGK 542 ************************************************9*************************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E+++Vn+ ++ +l de+v++es+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+le+++pr++ +r+ +Er ++gre+ nv+ 462924325 543 DEVVVVNCLYRFRNLIDETVAVESPRNRVLNTIRQINPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETTVPRDDAQRALIERDMFGREALNVI 642 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aceg++r+er et+++W+ r +aGF ++pl+++++++ak ++ ++ + + ++e+sg+l++gWk+r ++++S W+ 462924325 643 ACEGSDRVERPETYKQWQVRNLRAGFVQAPLNQEIVMKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 718 *******************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.37	321	698	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-117	347	718	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MASSPAHFLE ACLMMVTQTT TARVIISGSL IRSLQSPRRW QQSPAPVLRP PCRGPTLKLT 60 TQRIGSSSDE SLNYISRMLM EEDIDEKVSM YQAESAALPA AAKPFYDILG HKFPPSPDHQ 120 PISWSLDSPA ESGSSNHTQS LASTVTSSSI GGSVDSNQHY SEQLETYRGL HGQSPPPLVG 180 PSSDSCIPDG MLEYPLITNG RIPEYLFESL PTWDFRRNVE GAQKFLPGSD KLVIDLESTS 240 VSRPQEIRKD VSLGAKKEEV LNSKKNRQSE DLDLLEGRII KQSVFCSDEP DWIEMFDNLL 300 RQTEKKATVL REMMRNEASK NTQVTQTKPS GPRPRGRKPT KRDVVDLRTI LIHCAQAVAA 360 DDRRTANELL KQIRQHSKPN GDGTQRLAHC FADGLEARMA GTGSQLYHKL VAKRTTASDM 420 LKAYHLYLAA CPFKRLSHFL SNQTILSMTK NATKVHIIDF GIYFGLQWPC LIRRLSKREG 480 GPPILRITGI DVPQPGFRPS ERIEETGLRL AEYARKFDVP FEYQGIASKW ETIRVEDLKV 540 GKDEVVVVNC LYRFRNLIDE TVAVESPRNR VLNTIRQINP AIFIHGIVNG SYSVPFFITR 600 FREALFHFSA LFDMLETTVP RDDAQRALIE RDMFGREALN VIACEGSDRV ERPETYKQWQ 660 VRNLRAGFVQ APLNQEIVMK AKDKVKDIYH KDFVIDEDSG WLLQGWKGRI IYAISTWKPN 720 KN

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MASSPAHFLE ACLMMVTQTT TARVIISGSL IRSLQSPRRW QQSPAPVLRP PCRGPTLKLT  60
TQRIGSSSDE SLNYISRMLM EEDIDEKVSM YQAESAALPA AAKPFYDILG HKFPPSPDHQ  120
PISWSLDSPA ESGSSNHTQS LASTVTSSSI GGSVDSNQHY SEQLETYRGL HGQSPPPLVG  180
PSSDSCIPDG MLEYPLITNG RIPEYLFESL PTWDFRRNVE GAQKFLPGSD KLVIDLESTS  240
VSRPQEIRKD VSLGAKKEEV LNSKKNRQSE DLDLLEGRII KQSVFCSDEP DWIEMFDNLL  300
RQTEKKATVL REMMRNEASK NTQVTQTKPS GPRPRGRKPT KRDVVDLRTI LIHCAQAVAA  360
DDRRTANELL KQIRQHSKPN GDGTQRLAHC FADGLEARMA GTGSQLYHKL VAKRTTASDM  420
LKAYHLYLAA CPFKRLSHFL SNQTILSMTK NATKVHIIDF GIYFGLQWPC LIRRLSKREG  480
GPPILRITGI DVPQPGFRPS ERIEETGLRL AEYARKFDVP FEYQGIASKW ETIRVEDLKV  540
GKDEVVVVNC LYRFRNLIDE TVAVESPRNR VLNTIRQINP AIFIHGIVNG SYSVPFFITR  600
FREALFHFSA LFDMLETTVP RDDAQRALIE RDMFGREALN VIACEGSDRV ERPETYKQWQ  660
VRNLRAGFVQ APLNQEIVMK AKDKVKDIYH KDFVIDEDSG WLLQGWKGRI IYAISTWKPN  720
KN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-50	351	718	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462924325

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794111.1	0.0	scarecrow-like protein 9
TrEMBL	A0A3L6S7Z0	0.0	A0A3L6S7Z0_PANMI; Scarecrow-like protein 9
STRING	Pavir.J32327.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein