PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462924531

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 205aa MW: 22407.8 Da PI: 9.1397

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462924531	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	77.5	2.9e-24	9	84	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++w+fF++r +++ +g r+ r+t sgyWkatg+ v+s+ +++ g k+t+vfy+grap+g++t+W m+ey++ 462924531 9 DTEQWFFFCPRTEREVHGGRPVRTTPSGYWKATGSPSGVVSSsADRVLGEKRTMVFYEGRAPTGTRTSWKMNEYKA 84 5679*****************************9999987677889************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.425	1	117	IPR003441	NAC domain
SuperFamily	SSF101941	5.36E-26	7	117	IPR003441	NAC domain
Pfam	PF02365	1.5E-11	12	83	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MAGAANVSDT EQWFFFCPRT EREVHGGRPV RTTPSGYWKA TGSPSGVVSS SADRVLGEKR 60 TMVFYEGRAP TGTRTSWKMN EYKAAVVADP GPVAAAAVNS APIRLRNEFS VCRVYKSNGT 120 LRSFDRRPLN PVGHDQAVAV HHQQQQLVLP STTNTTNQRA ADNIANRQTT ENSHDISSSG 180 SRDAVVDGTY DTAIDWESLI PLLRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-17	11	120	71	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-17	11	120	71	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-17	11	120	71	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-17	11	120	71	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-17	11	120	74	171	NAC domain-containing protein 19
3swm_B	2e-17	11	120	74	171	NAC domain-containing protein 19
3swm_C	2e-17	11	120	74	171	NAC domain-containing protein 19
3swm_D	2e-17	11	120	74	171	NAC domain-containing protein 19
3swp_A	2e-17	11	120	74	171	NAC domain-containing protein 19
3swp_B	2e-17	11	120	74	171	NAC domain-containing protein 19
3swp_C	2e-17	11	120	74	171	NAC domain-containing protein 19
3swp_D	2e-17	11	120	74	171	NAC domain-containing protein 19
4dul_A	2e-17	11	120	71	168	NAC domain-containing protein 19
4dul_B	2e-17	11	120	71	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462924531

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978711.1	2e-80	NAC domain-containing protein 90
TrEMBL	K3ZJF4	4e-79	K3ZJF4_SETIT; Uncharacterized protein
STRING	Si026707m	7e-80	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	8e-42	NAC domain containing protein 61