PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462924824
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 580aa    MW: 64638.9 Da    PI: 5.6135
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462924824genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.72.6e-1281555181367
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++++++c +av+++dl l++ l+++l +l+s +gdpmqRl ay++e++ arl++s+s lyk+l+++e +   sse ++++ l++e++P++kf+++ aN 
  462924824 155 LKQVIVACGKAVAENDLFLTELLISELGQLVSVSGDPMQRLGAYMLEGIVARLSSSGSMLYKSLKCKEPT---SSELMSYMGLLYEICPFFKFGYMSANG 251
                57899****************************************************************9...999************************ PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp +RiTg+++++s   +   l  +g rL ++A+++g+pfefn+ v  + ++++le+L+++p
  462924824 252 AIAEAIKGENFVHIIDFQIAQGSQWITLIQALAARPGGPPCIRITGIDDSNSAyaRGGGLDIVGMRLYNVAQSCGLPFEFNA-VPAASHEVQLEHLDIRP 350
                *************************************************988899999************************.7999************* PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                +E++aVn+++qlh+++desvs+e++rd++++++ks++P+vv++veqe+++n+++F+ r +e+l+yy+a+f+s+++ lpr+++ r++ E+++++r+ivn++
  462924824 351 REVIAVNFAYQLHHVPDESVSMENHRDRIIRMIKSINPRVVTLVEQESNTNTAPFFPRYMETLNYYTAMFESIDVALPRDDRRRMSTEQHCVARDIVNLI 450
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                acegaer+erhe ++kW++r+ +aGF+p+pls+ +++++++llr ++  gyr+ee +g l+lgWk+r +
  462924824 451 ACEGAERVERHELFGKWKARFAMAGFRPYPLSSVVNNTISTLLRSYN-GGYRLEETDGVLYLGWKNRVV 518
                ***********************************************.89****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.659129506IPR005202Transcription factor GRAS
PfamPF035148.8E-126155518IPR005202Transcription factor GRAS
PfamPF032261.4E-8518575IPR004910Yippee/Mis18/Cereblon
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MAYYNNSVPS GENGRFYAMQ NNLDHHYSSS DDGSQRINSS NPRVFDAQYC TLESSSGNGV  60
YPAQSSTSSH SISPISGSPL SQHDSHSDHT YNSPPSASCL TEVADLQVKL KELENAILGP  120
ELDITSDSPE SFLQTNAPLR PDNWKQLLGI DTGDLKQVIV ACGKAVAEND LFLTELLISE  180
LGQLVSVSGD PMQRLGAYML EGIVARLSSS GSMLYKSLKC KEPTSSELMS YMGLLYEICP  240
FFKFGYMSAN GAIAEAIKGE NFVHIIDFQI AQGSQWITLI QALAARPGGP PCIRITGIDD  300
SNSAYARGGG LDIVGMRLYN VAQSCGLPFE FNAVPAASHE VQLEHLDIRP REVIAVNFAY  360
QLHHVPDESV SMENHRDRII RMIKSINPRV VTLVEQESNT NTAPFFPRYM ETLNYYTAMF  420
ESIDVALPRD DRRRMSTEQH CVARDIVNLI ACEGAERVER HELFGKWKAR FAMAGFRPYP  480
LSSVVNNTIS TLLRSYNGGY RLEETDGVLY LGWKNRVVNI TLGPNENRNF TTGLHTVKDV  540
YCNCCQQLLG WRYEKAYEES EKYKEGKFIL EKAMIGKEAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-561575166366GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462924824
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983228.10.0scarecrow-like protein 21
RefseqXP_004983229.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0A9EAW10.0A0A0A9EAW1_ARUDO; GRAS54
STRINGSi035053m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]