PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462925329

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 583aa MW: 65402 Da PI: 6.5665

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462925329	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366.7	3.2e-112	212	582	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++lL++cA+a + +d+++ +lL+++++++s gd+ qRla++f+ +L+arla+++s++y++l++++ts + + ++a+ l++ ++P+ k+sh+ aN + 462925329 212 TTLLIHCAQAAAIDDQRNSIELLKQIRKHSSAVGDAGQRLAHCFADGLEARLAGTGSNIYRSLAAKRTS---TNDIVKAFGLYVTACPFKKVSHFFANMT 308 689**********************************************************999999...78899999**************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 I +a + ++++HiiDf+i++G+QWp L+q L+sR +gppslRiTg++ p++g +e++e+tg+rL+++A++l+vpfe+ + +a +++++++e+L+++++ 462925329 309 IFKASKVASKLHIIDFGIQYGFQWPVLIQLLSSRHGGPPSLRITGIDFPQPGfrPAERIEATGRRLHEYARTLNVPFEYCA-IAAKWDTIQVEDLKINSD 407 ***********************************************9*************************.799*********** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E l+Vn+ +++ +++de+v+ +s+r++vL+++ +++P+++++ + +n++ F++rf eal ++s+lfd+le++ +r++e r +Er + gre+ nv+a 462925329 408 ELLVVNCLFRMRNVMDETVTDDSPRTRVLNTISKTNPHLFIHGVVNGTYNAPFFVTRFKEALFHFSSLFDMLEVNTSRTDELRLLIERDFYGREALNVIA 507 ************************************************************************************************ PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ceg+er+er et+++W+ r +aGF+++pl+e+++k a++ ++k + + + v+e++++++lgWk+r ++++SaW+ 462925329 508 CEGTERIERPETYKQWQLRNLRAGFRQLPLDEDIMKRARYKVSKSYHRDFLVDEDNKWMLLGWKGRIIFALSAWT 582 ******************************************999***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.246	185	562	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-109	212	582	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MLAQSMATPS PTSTTTTELD NSEDSSEAVA DDAVLAYINQ FLLDEEFYPV TDASVEDSAL 60 LAVEKPFVDI LTAAKPTDAH EAKSWMTDDC DSSGSIGSHD VSTSNQKFGQ SPCEMVKEGA 120 KCAVHKGRKK PHDNDLESEE RRSKQTALCE EEVVREMLDR VLLCTDKNCE FRSPLPADAQ 180 ISGGYVKGSG NKRGRRKGRS SAGAEEEAVD LTTLLIHCAQ AAAIDDQRNS IELLKQIRKH 240 SSAVGDAGQR LAHCFADGLE ARLAGTGSNI YRSLAAKRTS TNDIVKAFGL YVTACPFKKV 300 SHFFANMTIF KASKVASKLH IIDFGIQYGF QWPVLIQLLS SRHGGPPSLR ITGIDFPQPG 360 FRPAERIEAT GRRLHEYART LNVPFEYCAI AAKWDTIQVE DLKINSDELL VVNCLFRMRN 420 VMDETVTDDS PRTRVLNTIS KTNPHLFIHG VVNGTYNAPF FVTRFKEALF HFSSLFDMLE 480 VNTSRTDELR LLIERDFYGR EALNVIACEG TERIERPETY KQWQLRNLRA GFRQLPLDED 540 IMKRARYKVS KSYHRDFLVD EDNKWMLLGW KGRIIFALSA WTS

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MLAQSMATPS PTSTTTTELD NSEDSSEAVA DDAVLAYINQ FLLDEEFYPV TDASVEDSAL  60
LAVEKPFVDI LTAAKPTDAH EAKSWMTDDC DSSGSIGSHD VSTSNQKFGQ SPCEMVKEGA  120
KCAVHKGRKK PHDNDLESEE RRSKQTALCE EEVVREMLDR VLLCTDKNCE FRSPLPADAQ  180
ISGGYVKGSG NKRGRRKGRS SAGAEEEAVD LTTLLIHCAQ AAAIDDQRNS IELLKQIRKH  240
SSAVGDAGQR LAHCFADGLE ARLAGTGSNI YRSLAAKRTS TNDIVKAFGL YVTACPFKKV  300
SHFFANMTIF KASKVASKLH IIDFGIQYGF QWPVLIQLLS SRHGGPPSLR ITGIDFPQPG  360
FRPAERIEAT GRRLHEYART LNVPFEYCAI AAKWDTIQVE DLKINSDELL VVNCLFRMRN  420
VMDETVTDDS PRTRVLNTIS KTNPHLFIHG VVNGTYNAPF FVTRFKEALF HFSSLFDMLE  480
VNTSRTDELR LLIERDFYGR EALNVIACEG TERIERPETY KQWQLRNLRA GFRQLPLDED  540
IMKRARYKVS KSYHRDFLVD EDNKWMLLGW KGRIIFALSA WTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-51	215	581	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462925329

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793343.1	0.0	scarecrow-like protein 9
Refseq	XP_025793344.1	0.0	scarecrow-like protein 9
Refseq	XP_025793345.1	0.0	scarecrow-like protein 9
Refseq	XP_025793346.1	0.0	scarecrow-like protein 9
Swissprot	Q9XE58	1e-169	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A0A9TYC8	0.0	A0A0A9TYC8_ARUDO; Uncharacterized protein
STRING	Pavir.Ia00281.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13841	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-169	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]