PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462925359

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 245aa MW: 27092.6 Da PI: 6.5345

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462925359	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	65.6	8.1e-21	180	221	1	41
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers 41 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+++ s 462925359 180 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQIQPS 221 58*************************99******976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.6E-21	165	221	IPR003657	WRKY domain
SuperFamily	SSF118290	7.98E-19	173	221	IPR003657	WRKY domain
PROSITE profile	PS50811	19.795	175	219	IPR003657	WRKY domain
SMART	SM00774	7.2E-18	180	231	IPR003657	WRKY domain
Pfam	PF03106	1.8E-18	181	221	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MGEVREENER LKKMLSRVTE DYQSLQMHFR EVLQQEQAKK LADTTTSLDT DIEEPGFVSL 60 RLGTSTSIHK KEAKSSIAEG NGREELMTIK EGGLTLGLSD CKVGATNSGK VQPNVLTLSP 120 EGSSEDAKDD AVETTDQWPP SKTLKNARDG DAEVEDDIGP LPQVKKARVS VRARCDAPTM 180 NDGCQWRKYG QKIAKGNPCP RAYYRCTVAA GCPVRKQIQP SVLAVYEEFK TSKWLIGMDQ 240 QLANK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462925359

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248555	4e-45	AK248555.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf78b10, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964541.1	1e-121	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	7e-60	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A368QQA3	1e-119	A0A368QQA3_SETIT; Uncharacterized protein
TrEMBL	K3XWA9	1e-120	K3XWA9_SETIT; Uncharacterized protein
STRING	Si006217m	1e-121	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	9e-52	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]