PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462925440
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YA
Protein Properties Length: 332aa    MW: 36044.3 Da    PI: 9.2811
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462925440genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.33.9e-31162218158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                d+p+YVNaKQy++Il+RR +Rak+e+e++l  k+rkpylheSRh hA+rR+RgsgGrF
  462925440 162 DAPIYVNAKQYEGILRRRRARAKAERENRL-VKGRKPYLHESRHLHAMRRARGSGGRF 218
                68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-34160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.3161221IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.8E-28164218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-23164186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.2E-23195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMSFKSHEGF GQVTALNKAS NGAGTPLPWW AGPQLLYGEP VPLSPEETRR DGQFQVVPGA  60
QGSPDPAPPS AKRAAPEVLK FSVFQGNSDS GTRGNKAPDH STTIALQSPL PEYNGRFEIG  120
LGQSMVSPNY SCPDQCYGLL TTYAMRSMSG GRMLLPLNAS ADAPIYVNAK QYEGILRRRR  180
ARAKAERENR LVKGRKPYLH ESRHLHAMRR ARGSGGRFLN TKKEGHSKET DASGGNKMAT  240
HASPFSYSLQ LEPGNNQRHC HSRSSGSSGL SGSEASNMYE HDDADHYNSS IEHLRTPFFT  300
PLPSIMDGEH GAAAIPSFKW AASDGCCELL KA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A5e-18162220261HAPB protein
4g92_A5e-18162220261HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462925440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796559.11e-145nuclear transcription factor Y subunit A-10-like
RefseqXP_025796560.11e-145nuclear transcription factor Y subunit A-10-like
RefseqXP_025796561.11e-145nuclear transcription factor Y subunit A-10-like
TrEMBLA0A0A9RWX31e-164A0A0A9RWX3_ARUDO; Uncharacterized protein
STRINGPavir.Ib04124.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.33e-24nuclear factor Y, subunit A10