PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462925461
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family YABBY
Protein Properties Length: 188aa    MW: 21087.1 Da    PI: 8.9022
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462925461genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY232.41.1e-7151623170
      YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl. 101
                +  ++e+vCyv+CnfCntilavsvP + ++++vtvrCGhC+sllsvnl+   q l++++h        l+e  kv++ ++++n +++  + ++ +++++ 
  462925461   5 IAPAPEHVCYVHCNFCNTILAVSVPGNNMLNIVTVRCGHCASLLSVNLRGLIQSLSVQNH--------LQESFKVHNISFTENCSEYAPSPSKYRTQTMf 96 
                67899******************************************************9........56667788888888888887766666655555 PP

      YABBY 102 .senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 ++++++++ +    +r Pekrqr+Psaynrfikeei+rikasnPdishreafs+aaknWahfP+ihfgl
  462925461  97 pTKHDQDHMLH----VRGPEKRQRIPSAYNRFIKEEIRRIKASNPDISHREAFSTAAKNWAHFPNIHFGL 162
                45556666665....89***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.1E-709162IPR006780YABBY protein
SuperFamilySSF470952.88E-8104156IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.2E-5108156IPR009071High mobility group box domain
CDDcd000841.54E-4118152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSLQIAPAPE HVCYVHCNFC NTILAVSVPG NNMLNIVTVR CGHCASLLSV NLRGLIQSLS  60
VQNHLQESFK VHNISFTENC SEYAPSPSKY RTQTMFPTKH DQDHMLHVRG PEKRQRIPSA  120
YNRFIKEEIR RIKASNPDIS HREAFSTAAK NWAHFPNIHF GLGPHESSKK LDEAIGAAGC  180
PQKVQGLF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462925461
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795820.11e-115protein YABBY 2-like isoform X4
SwissprotQ10FZ71e-104YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2T7C3301e-116A0A2T7C330_9POAL; Uncharacterized protein
STRINGPavir.Ia01130.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-56YABBY family protein