PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462925586

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 238aa MW: 27186.8 Da PI: 7.1769

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462925586	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.8	9e-53	19	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel. 99 lppGfrFhPtdee++++yL++kv ++++++ +i e+di+k+ePw+Lp k+k +ekewyf++ +d+ky+tg r+nrat++gyWkatgkd+ + + +++ 462925586 19 LPPGFRFHPTDEEIITYYLTNKVLDENFTA-IAIGETDINKSEPWELPYKAKMGEKEWYFYCLKDRKYPTGFRANRATEAGYWKATGKDRGIDCGASSVl 117 79***********************999.88***********99999***********************************99644446 PP NAM 100 ..vglkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfykgrap+g+ktdWvmheyrl 462925586 118 vlLGMKKTLVFYKGRAPNGVKTDWVMHEYRL 148 779************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-59	13	185	IPR003441	NAC domain
PROSITE profile	PS51005	55.732	19	185	IPR003441	NAC domain
Pfam	PF02365	1.9E-27	20	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
EDQEQLQQWR SGGANGLELP PGFRFHPTDE EIITYYLTNK VLDENFTAIA IGETDINKSE 60 PWELPYKAKM GEKEWYFYCL KDRKYPTGFR ANRATEAGYW KATGKDRGID CGASSVLVLL 120 GMKKTLVFYK GRAPNGVKTD WVMHEYRLNN KRKVRCPAAS SNSNTKKPAC SSYKEEWVVC 180 RVFQKSSCAR KVSEFTLVLA PSSRMPMEDG GEDLSCMSFP MPTQFPVEIE DFTDYSNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-51	17	191	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-51	17	191	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-51	17	191	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-51	17	191	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	7e-51	17	191	18	174	NAC domain-containing protein 19
3swm_B	7e-51	17	191	18	174	NAC domain-containing protein 19
3swm_C	7e-51	17	191	18	174	NAC domain-containing protein 19
3swm_D	7e-51	17	191	18	174	NAC domain-containing protein 19
3swp_A	7e-51	17	191	18	174	NAC domain-containing protein 19
3swp_B	7e-51	17	191	18	174	NAC domain-containing protein 19
3swp_C	7e-51	17	191	18	174	NAC domain-containing protein 19
3swp_D	7e-51	17	191	18	174	NAC domain-containing protein 19
4dul_A	6e-51	17	191	15	171	NAC domain-containing protein 19
4dul_B	6e-51	17	191	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462925586

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801540.1	1e-87	NAC domain-containing protein 79-like
Swissprot	Q9FLJ2	4e-77	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2S3GZ79	3e-86	A0A2S3GZ79_9POAL; Uncharacterized protein
STRING	Si030284m	3e-85	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-79	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]