PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462925871

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB

Protein Properties

Length: 255aa MW: 27787 Da PI: 7.8439

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462925871	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl 462925871 14 KGAWTKEEDQRLVAYIKAHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.3	1.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEd+ ++++++ lG++ W++Ia +++ gRt++++k++w+++ 462925871 67 RGNFTSEEDDAIIKLHQVLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.526	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.47E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.07E-11	16	61	No hit	No description
PROSITE profile	PS51294	26.632	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.79E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIK AHGEGCWRSL PKAAGLQRCG KSCRLRWINY 60 LRPDLKRGNF TSEEDDAIIK LHQVLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRRLLGRG 120 IDPKTHRPLN ETAAAAAAPS RQIQDDHLAR SSCSPEASGA GHSSDEDSAA TGGSLPETSS 180 QSQQQQQLAC IDLNLSISPP SPRQEEEAGS STKGTAGAST SKSERICLCL NRLGLQCDEH 240 CTCSDGLQIE DINGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-29	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462925871

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM156905	1e-138	AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene).
GenBank	EU963911	1e-138	EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds.
GenBank	HQ858692	1e-138	HQ858692.1 Zea mays clone UT1148 ZmMYB8 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977235.1	1e-115	myb-related protein Zm38
Swissprot	P81393	2e-93	MYB08_ANTMA; Myb-related protein 308
TrEMBL	K3YEC2	1e-113	K3YEC2_SETIT; Uncharacterized protein
STRING	Si012585m	1e-114	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	7e-88	myb domain protein 6

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]