PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462925913
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 184aa    MW: 20173.2 Da    PI: 4.3414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462925913genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.78.1e-1576120755
        AP2   7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                r+++ +grW++eIrdp+    +  r +lg+f+ta +Aa+a++a + +++g
  462925913  76 RRRP-WGRWASEIRDPV----KgVRLWLGTFDTAVDAARAYDAEACRIYG 120
                5666.**********75....44**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.7769128IPR001471AP2/ERF domain
PRINTSPR003676.3E-67283IPR001471AP2/ERF domain
CDDcd000187.80E-2776130No hitNo description
PfamPF008478.8E-776120IPR001471AP2/ERF domain
SMARTSM003802.0E-2876134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-2776128IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-1876128IPR016177DNA-binding domain
PRINTSPR003676.3E-694110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MCGQAMMPMD YAVPAASPRR RSAGIINRKK CGKEAWDGRK QWEAALREFM NGDSDDDDDD  60
SSESTDTEAP QVVPCRRRPW GRWASEIRDP VKGVRLWLGT FDTAVDAARA YDAEACRIYG  120
ARAKTNFPPV DDKASTTSTS TEPEGLGNSS DASAPLELEC CSDDVLDSLL AGFSDSNTDH  180
WLQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1675128963ATERF1
3gcc_A2e-1675128963ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462925913
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0900567e-46AC090056.2 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence.
GenBankAK0686887e-46AK068688.1 Oryza sativa Japonica Group cDNA clone:J013163J01, full insert sequence.
GenBankAK1060577e-46AK106057.1 Oryza sativa Japonica Group cDNA clone:001-206-F09, full insert sequence.
GenBankAP0057057e-46AP005705.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0453B09.
GenBankAP0067587e-46AP006758.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0663H05.
GenBankAP0149657e-46AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankEU4294427e-46EU429442.1 Oryza nivara strain IRRG-80470 submergence-1B mRNA, partial cds.
GenBankEU4294437e-46EU429443.1 Oryza nivara strain IRRI-IRGC-101524 submergence-1B mRNA, complete cds.
GenBankEU4294447e-46EU429444.1 Oryza rufipogon strain IRRG-80506 submergence-1B mRNA, partial cds.
GenBankEU8475207e-46EU847520.1 Oryza sativa Japonica Group clone OsEP4 AP2/ERF domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610635.11e-27ethylene-responsive transcription factor 1-like
TrEMBLA0A0D9XC348e-32A0A0D9XC34_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9XC416e-32A0A0D9XC41_9ORYZ; Uncharacterized protein
STRINGLPERR09G02840.11e-32(Leersia perrieri)
STRINGLPERR09G02880.11e-32(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-17ERF family protein