PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926338
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family S1Fa-like
Protein Properties Length: 97aa    MW: 10654.5 Da    PI: 10.2219
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926338genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA133.94.1e-422897270
       S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
               +v+++e+ kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvs+kklkreklkqGv++PGe
  462926338 28 NVVIEEVnKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSRKKLKREKLKQGVSAPGE 97
               56778888*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190134.0E-102997No hitNo description
PfamPF046897.5E-393397IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MIPDEQRAVF GSDQATAMAE QFADSASNVV IEEVNKGLNP GMIVLLVVAS FLLLFFVGNY  60
ALYVYAQKTL PPKKKKPVSR KKLKREKLKQ GVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926338
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919812e-84FP091981.1 Phyllostachys edulis cDNA clone: bbasst002p11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633609.13e-32DNA-binding protein S1FA2
SwissprotQ7XLX63e-33S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0D3FVJ59e-32A0A0D3FVJ5_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZKE55e-32A0A0D9ZKE5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H0D25e-32A0A0E0H0D2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P8S35e-32A0A0E0P8S3_ORYRU; Uncharacterized protein
STRINGOGLUM04G11330.19e-33(Oryza glumipatula)
STRINGORUFI04G12840.19e-33(Oryza rufipogon)
STRINGONIVA04G09610.19e-33(Oryza nivara)
STRINGOBART04G11650.11e-32(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]