PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926370
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family SBP
Protein Properties Length: 445aa    MW: 49334.3 Da    PI: 9.4516
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926370genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.55e-40165244178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETT..EEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsg..leqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +Cqv+gC+adls+ak+yhrrh+vCe+hskapvv+++g  + qrfCqqCsrfhe++efD+ek+sCr+rLa+hn+rrrk+++
  462926370 165 RCQVDGCTADLSKAKRYHRRHRVCEHHSKAPVVITAGaiMPQRFCQQCSRFHEVDEFDDEKKSCRQRLADHNRRRRKPKP 244
                6*********************************9984458************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-33160229IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.838163242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-36164245IPR004333Transcription factor, SBP-box
PfamPF031106.4E-32166241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MMNPAAASAC DGDHPYIAAS GNPVPLPPPS LFLPNPIMDQ LESRSFLRSE QLNTSDSMEV  60
SLQGLLAPAT NNAVADYTSH YGHDHDTIQL YPPAPHYLAA GNPYGTYLPT LQEYYFPTLL  120
EENMASFRAA PQAQLGLDYG YSYGGYRTYY YPQRGDYAYG HHPPRCQVDG CTADLSKAKR  180
YHRRHRVCEH HSKAPVVITA GAIMPQRFCQ QCSRFHEVDE FDDEKKSCRQ RLADHNRRRR  240
KPKPSGTDVA LKKRARAKKS ATAKNEASSS KNMVTGDVLG TQELRSASKE HDRSMGALGE  300
VAREPVDPKG KAPMKQQARI PQQNVQQGFP LMMSPASSGT DTCTPQNHPV SGGNTSQVQE  360
PCLAFHQHHQ HGKIILQLGQ ATRVSNITSD KRFNYASPNK NKNMGSRTFE PSNGSVNMSS  420
PYSKRYPSLP HWLLAKDAAA GLPRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-281662411184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224241KKSCRQRLADHNRRRRKP
2236253RRRRKPKPSGTDVALKKR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the formation of ligules and auricles during leaf organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.11e-113protein LIGULELESS 1
SwissprotO040031e-93LG1_MAIZE; Protein LIGULELESS 1
TrEMBLK3Z6Z51e-112K3Z6Z5_SETIT; Uncharacterized protein
STRINGSi022315m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-33squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Sylvester AW,Cande WZ,Freeling M
    Division and differentiation during normal and liguleless-1 maize leaf development.
    Development, 1990. 110(3): p. 985-1000
    [PMID:2088734]