PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926373
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family SBP
Protein Properties Length: 150aa    MW: 16652.5 Da    PI: 9.0664
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926373genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP46.68.9e-1541704877
               SEEETTT--SS--S-STTTT-------S-- CS
        SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkq 77
               rfhe++efD+ek+sCr+rLa+hn+rrrk +
  462926373 41 RFHEVDEFDDEKKSCRQRLADHNRRRRKLK 70
               9**************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.015169IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.83E-114172IPR004333Transcription factor, SBP-box
PfamPF031105.9E-94168IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MKICLSLEYT RLRQSAPSHL VEPCQVQSSD FCFFGSTLSF RFHEVDEFDD EKKSCRQRLA  60
DHNRRRRKLK PSGTDIALKR RAHAKNSTTA EKEASSSKNI GTGDVLGTQE PWRGGARTGG  120
SQGESSDDAA STHPSTEHPA RLPSYVVACR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15168KKSCRQRLADHNRRRRKL
26380RRRRKLKPSGTDIALKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926373
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634037.16e-18squamosa promoter-binding-like protein 8
SwissprotQ01KM75e-19SPL8_ORYSI; Squamosa promoter-binding-like protein 8
STRINGOPUNC04G25460.11e-17(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-10squamosa promoter binding protein-like 9