PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926487
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 97aa    MW: 11272 Da    PI: 10.4552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926487genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.98.9e-1913941599
               -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
         B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
               +l l+ ++a+e+   +++++t++  ++ g++W+ ++ + +++++ +l +GW +F+++ngL++gD+++F+l+++ +e +++v+++++
  462926487 13 MLELSVRYAAEYL--PAGGRTVV-LQRMGKTWNTQMVIHNGRRW-FLNGGWTKFARDNGLRVGDICLFELTKKeEELTMNVHIISR 94
               5678888998883..34555666.667*********77777766.6999**********************888*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.7E-8195IPR003340B3 DNA binding domain
PROSITE profilePS5086313.394195IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-191293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-211294IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-181393No hitNo description
PfamPF023627.3E-171494IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MKNNNAGAAQ RWMLELSVRY AAEYLPAGGR TVVLQRMGKT WNTQMVIHNG RRWFLNGGWT  60
KFARDNGLRV GDICLFELTK KEEELTMNVH IISREQF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926487
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.11e-51B3 domain-containing protein Os03g0619800-like isoform X3
SwissprotQ6AV221e-22Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A0A9HSP48e-51A0A0A9HSP4_ARUDO; Uncharacterized protein
TrEMBLA0A2T8I4L16e-51A0A2T8I4L1_9POAL; Uncharacterized protein
STRINGPavir.Ib02116.1.p2e-51(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.18e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]