PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462926496

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 490aa MW: 55031.6 Da PI: 7.8426

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462926496	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.2	2.1e-11	226	304	16	96
EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 l ++k++a+++ +++s+ +tl++ ++++W + r s++ +l + W +Fv++n+++egD+++++ ++ ++++l+++v 462926496 226 LGISKEYASAYF--PHKSTNVTLRTpGKSKKWHPIFYKRDESRKNMLMGQWLQFVRDNHVQEGDICLIEPTK-DGRRLMFSV 304 7899***997..457789*5566***668888889**********************776.555567665 PP
2	B3	41.3	2.8e-13	415	484	24	89
HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 24 eeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 e ++ +++ t++ + + We k+ + +++++ +l +GW +F+++n+L++gD+++F+l++++ 462926496 415 LELgsryasvHLP-ARGETVV-LQCGRKIWETKMVIHNGRRW-FLNGGWPKFARDNDLRVGDICLFELKKNEA 484 4444433432333.4554444.555889****77777766.6999******************998633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.1E-18	203	302	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.51E-17	205	303	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.6E-5	210	308	IPR003340	B3 DNA binding domain
CDD	cd10017	6.81E-20	210	305	No hit	No description
PROSITE profile	PS50863	9.841	211	308	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.2E-10	225	304	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.1E-19	390	483	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-17	391	483	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.58E-19	396	490	No hit	No description
SMART	SM01019	6.5E-4	398	490	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.4E-11	418	487	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.928	440	490	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MPSAQCLVLL KSIDAATRYC LDKIVFDASL ADWLCYECLQ RLGEVTCSRS LEKVLSERRA 60 SHACFCSTSH QPIIKSVESA CDAEPWRNNM DSGANLTGVG NIPTVEKRSV DFVDTAHGAT 120 KSSENSTRFA ESQKGSCCHR EKTVKMTTTS TSFEESGEDI PSESESLESD DLQEPPGDNF 180 VLSRTSYLSE SQKKRVKVFI KETKPETTVF VAIMRRSNVQ PPGPSLGISK EYASAYFPHK 240 STNVTLRTPG KSKKWHPIFY KRDESRKNML MGQWLQFVRD NHVQEGDICL IEPTKDGRRL 300 MFSVYLLHLA ETQRGGACSQ MVDPYSGESR ATTALEVNIK EEQPTDGEPL PHESLESEDF 360 VCPCQPQYIV PCRNGLSKSQ KKIVDGRVRA IQSEVPICVA VMKNNNVGIA QKWMLELGSR 420 YASVHLPARG ETVVLQCGRK IWETKMVIHN GRRWFLNGGW PKFARDNDLR VGDICLFELK 480 KNEARLTMAI

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MPSAQCLVLL KSIDAATRYC LDKIVFDASL ADWLCYECLQ RLGEVTCSRS LEKVLSERRA  60
SHACFCSTSH QPIIKSVESA CDAEPWRNNM DSGANLTGVG NIPTVEKRSV DFVDTAHGAT  120
KSSENSTRFA ESQKGSCCHR EKTVKMTTTS TSFEESGEDI PSESESLESD DLQEPPGDNF  180
VLSRTSYLSE SQKKRVKVFI KETKPETTVF VAIMRRSNVQ PPGPSLGISK EYASAYFPHK  240
STNVTLRTPG KSKKWHPIFY KRDESRKNML MGQWLQFVRD NHVQEGDICL IEPTKDGRRL  300
MFSVYLLHLA ETQRGGACSQ MVDPYSGESR ATTALEVNIK EEQPTDGEPL PHESLESEDF  360
VCPCQPQYIV PCRNGLSKSQ KKIVDGRVRA IQSEVPICVA VMKNNNVGIA QKWMLELGSR  420
YASVHLPARG ETVVLQCGRK IWETKMVIHN GRRWFLNGGW PKFARDNDLR VGDICLFELK  480
KNEARLTMAI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462926496

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982416.1	0.0	B3 domain-containing protein Os03g0619800
Swissprot	Q6AV22	1e-102	Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBL	A0A368SHJ6	0.0	A0A368SHJ6_SETIT; Uncharacterized protein
TrEMBL	K4A8S2	0.0	K4A8S2_SETIT; Uncharacterized protein
STRING	Si035278m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	8e-07	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]