PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926628
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 693aa    MW: 76416 Da    PI: 7.6665
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926628genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-24101202199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++el++
  462926628 101 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDDGELRL 197
                99****************************963.3445679************************************************..3489999** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +v+r+
  462926628 198 GVRRA 202
                *9996 PP
2Auxin_resp111.77.1e-37227307182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +aha++tks F+++YnPr s+ eF+++++k++++l++++s+GmRfkm++e+ed+ err++G+++g+s++dp  W+ SkW++L
   462926628 227 VAHAVATKSEFHIYYNPRLSHCEFIIPYSKFMRSLSQPFSAGMRFKMRYESEDATERRYTGIITGISEADP-TWRASKWKCL 307
                 79*********************************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-4096204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-4396217IPR015300DNA-binding pseudobarrel domain
CDDcd100174.95E-2399201No hitNo description
SMARTSM010195.3E-23101203IPR003340B3 DNA binding domain
PfamPF023621.3E-22101202IPR003340B3 DNA binding domain
PROSITE profilePS5086313.493101203IPR003340B3 DNA binding domain
PfamPF065071.7E-30227307IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MTGIDLNDTS RSSSAATGTP PPPQPRPGAA VCLEAHLFCR VVDVTLHADA ATDEVYAQLA  60
LVAENEEMAR RLCGGSEDGS GGDADEGDAV KQRFARMPHM FCKTLTASDT STHGGFSVPR  120
RAAEDCFPPL DYSQQRPSQE LVAKDLHGTE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV  180
SGDAVLFLRG DDGELRLGVR RAAQLKNGSA FPALYNQCSN LGTLANVAHA VATKSEFHIY  240
YNPRLSHCEF IIPYSKFMRS LSQPFSAGMR FKMRYESEDA TERRYTGIIT GISEADPTWR  300
ASKWKCLMVR WDDDVDFRRS NRVSPWEVEL TGSVTGSHLS TPNSKRLKPC LPNANADFLV  360
PHGSSCHDFA ESAQFHKVLQ GQELHSYRTH NSTAAAAQHC EARNMQYIDE RSCSNDVSNS  420
IPGVPRLGAR APLGSPGFSY HCSGFGESQR FQKVLQGQEV LRPYRGAQVD ACMRTGSFHQ  480
QDGPLVPSVV NKWHTQLNGC VYRGPPASLL PSQTSSPPSV QMFQQSLSKM SQFEFGNGHM  540
DKHGDDRSAM FGHVEGIGRT EQMLMPQPHN VYGEVANGHL TIERLHSAIG IGKDVPDNRE  600
VRTNSCKLFG ISLTEKVPAR KEMDCDDANF PSPFQSLKQQ VPKSLGNSCA TVHEQRPVVG  660
RGLISCGVSG CLQMMIGSDD DVDESRLLIK LVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A8e-943333769361Auxin response factor 1
4ldw_A8e-943333769361Auxin response factor 1
4ldw_B8e-943333769361Auxin response factor 1
4ldx_A9e-943333769361Auxin response factor 1
4ldx_B9e-943333769361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926628
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807170.10.0auxin response factor 15-like
SwissprotQ8S9850.0ARFO_ORYSJ; Auxin response factor 15
TrEMBLA0A1E5W0030.0A0A1E5W003_9POAL; Auxin response factor
STRINGPavir.J08401.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-142ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]