PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462927109
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Dof
Protein Properties Length: 426aa    MW: 45731.3 Da    PI: 8.0741
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462927109genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.48.6e-4098158262
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s
  462927109  98 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 158
                7899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2794147IPR003851Zinc finger, Dof-type
PfamPF027012.7E-32100156IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.929102156IPR003851Zinc finger, Dof-type
PROSITE patternPS013610104140IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAECRAGAGG GDCLIKLFGK TIPVPELGAA AVVDVDKDLQ QSGSSTTEPK GQESTLQDST  60
GSPPQQGVTD TEDSSAEKNS SADQQGETAN QKEKLKKPDK ILPCPRCNSM DTKFCYYNNY  120
NINQPRHFCK NCQRYWTAGG AMRNVPVGAG RRKSKSASAA SHFLQRVRAA LPMDPLCTSA  180
KTNGTVLSFG SDMSSLDLTE QMKHLKEKLV PITRIKNRDD QSVDSCAEGG SAKAEDSKPT  240
NQKEKVEADK SANVLQHPCM NGVTMWPLSC APPPACYAPG IAIPFYPAAA AYWGYMVPGA  300
WNTPWPPHSQ SESATSPSSA SPASTKSNCF TPGKRHRDGD EDGNGKVWVP KTIRIDDADE  360
VARSSILSLI GINGDKVRKD GRGCKLASVF EEKDDAKTAT HIINSLPFLR GNPAAISRSL  420
TFQEGS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462927109
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2604560.0GQ260456.2 Eleusine coracana Dof-type zinc finger protein (DOF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985552.10.0cyclic dof factor 1
TrEMBLC7EAG30.0C7EAG3_ELECO; Dof-type zinc finger protein
STRINGPavir.Ia04317.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.29e-51cycling DOF factor 2