PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462927431
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 236aa    MW: 26755.2 Da    PI: 9.6555
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462927431genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.3e-51151491129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                lppGfrFhPtdee+++ yL +k  + ++   +++ ev+++++ePwdLp+k+k +ekewyf +++  ky+tg+r+nratk+gyWkatg+d+e++++     
  462927431  15 LPPGFRFHPTDEEVITSYLLQKFLNPSFAP-RAMGEVNLNSCEPWDLPSKAKMGEKEWYFLCHKGMKYPTGSRTNRATKEGYWKATGRDREIFKTasase 113
                79*************************888.88***************99999*****************************************988887 PP

        NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  ++elvg+kktLvfy grap+g+kt+Wvmheyrle
  462927431 114 ggGRELVGMKKTLVFYMGRAPRGSKTNWVMHEYRLE 149
                776777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5912176IPR003441NAC domain
PROSITE profilePS5100555.26415176IPR003441NAC domain
PfamPF023657.9E-2716148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVERGVKSEQ GDLFLPPGFR FHPTDEEVIT SYLLQKFLNP SFAPRAMGEV NLNSCEPWDL  60
PSKAKMGEKE WYFLCHKGMK YPTGSRTNRA TKEGYWKATG RDREIFKTAS ASEGGGRELV  120
GMKKTLVFYM GRAPRGSKTN WVMHEYRLEG KSKDNNHSNL RFNPKDEWVV CKVFNKKIEE  180
KKAAVEYSAG TPNASSISVD TAGDGGNDFL DSMIDPMSRR VGAVQRGSND HDQRRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-521318215171NO APICAL MERISTEM PROTEIN
1ut4_B6e-521318215171NO APICAL MERISTEM PROTEIN
1ut7_A6e-521318215171NO APICAL MERISTEM PROTEIN
1ut7_B6e-521318215171NO APICAL MERISTEM PROTEIN
3swm_A7e-521318218174NAC domain-containing protein 19
3swm_B7e-521318218174NAC domain-containing protein 19
3swm_C7e-521318218174NAC domain-containing protein 19
3swm_D7e-521318218174NAC domain-containing protein 19
3swp_A7e-521318218174NAC domain-containing protein 19
3swp_B7e-521318218174NAC domain-containing protein 19
3swp_C7e-521318218174NAC domain-containing protein 19
3swp_D7e-521318218174NAC domain-containing protein 19
4dul_A6e-521318215171NAC domain-containing protein 19
4dul_B6e-521318215171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462927431
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977422.11e-122NAC domain-containing protein 77
RefseqXP_004978484.11e-122NAC domain-containing protein 77
SwissprotQ5CD173e-99NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A368S3281e-121A0A368S328_SETIT; Uncharacterized protein
TrEMBLK3Y8761e-121K3Y876_SETIT; Uncharacterized protein
STRINGPavir.J21394.1.p1e-123(Panicum virgatum)
STRINGPavir.J39049.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-76Arabidopsis NAC domain containing protein 87