PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462927464

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 147aa MW: 16044.2 Da PI: 5.4691

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462927464	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62	1.5e-19	4	59	45	100
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+ +lal+k+e 462927464 4 CLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQLQMQLALAKAE 59 689*************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.695	1	60	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-17	4	57	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MDHCLQELPA QQRADAVSSL VYEANARMRD PVYGCVGAIS YLQQQVSQLQ MQLALAKAEI 60 LCVQMQQNDG QQGHPTAAPA SAKQQLQQQE MDGEACGNMF MQNGLMMNTL NSSAAHHQQH 120 LLGSFSSSGS TAMMLQEACL KKESLWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-18	5	61	56	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-18	5	61	56	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462927464

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100852	4e-62	FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978582.1	1e-54	LOB domain-containing protein 12
TrEMBL	A0A1E5V6L6	7e-58	A0A1E5V6L6_9POAL; LOB domain-containing protein 12
STRING	Si026864m	5e-54	(Setaria italica)
STRING	Sb08g000575.1	4e-54	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-24	LBD family protein