PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462927945
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 800aa    MW: 86727.2 Da    PI: 8.7189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462927945genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12650696455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  462927945 650 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 696
                799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.1E-50245430IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831646695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-19649714IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.54E-15649700No hitNo description
Gene3DG3DSA:4.10.280.104.1E-18650709IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-10650696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16652701IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MTHVPQAHSV PAREPSRGED GSQLGWDPSS AVSSKARKGS SRKEEEGVVV LPPSLPSIHP  60
GSTGGACTLG SRNPLPHQRN SATTSISFLN ERPASTHEVL SLLFAPVLGF TREEIRAPRL  120
GFHPPARAGF RGLGVDSGAG PSIRCTGDLF FFTPRVRREL IRPSWNLIGP LLFGVIDYIL  180
VHSIMVMKME IEDDGAAGGG TGGTWTEEDR ALGAAVLGTD AFAYLTKGGG AISQGLVATS  240
LSVDMQNRLQ ELVESDRPGA GWNYAIYWQL SRTKSGDLVL GWGDGSCREP RDGEVAAAAS  300
EGSDDTKQRM RKRVLQRLHI AFGGADEEDY ALGIDQVTDT EVFFLASMYF AFPRRVGGPG  360
QVFAAGIPLW IPNSERKVYP TNYCYRGFLA NAAGFRTIVL VPFESGVLEL GSMQHIAESP  420
DVIETIRSVF AGASGNKAAV QKPEGNGSTP TERSPSLAKI FGKDLNLGRP SAAPVVSVSK  480
VDERSWEQRS AAGGSSLLPN VPKVSPSYNW SQARGLNSHQ QKFGNGVLIV SNEAAQRSNG  540
AADSSSATHF QLQKVPPLQK LQLQKLPQIQ KPPPLVTQQQ LQPQVPRQID FSAGSSSKPG  600
VLVTRTSVLD GDSAEVDGLC KEEGPPPIVE DRRPRKRGRK PANGREEPLN HVEAERQRRE  660
KLNQRFYALR AVVPNISKMD KASLLGDAIT YITDLQKKLK EMETERERLL ESGMMGGTPR  720
PEVDIQVVQD EVLVRVMSPM ENHPVKKVFQ AFEEAEVRIG ESKVTGNNGT VVHSFIIKCP  780
GTEQQTREKV IAAMSRAMSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-27644706264Transcription factor MYC2
5gnj_B6e-27644706264Transcription factor MYC2
5gnj_E6e-27644706264Transcription factor MYC2
5gnj_F6e-27644706264Transcription factor MYC2
5gnj_G6e-27644706264Transcription factor MYC2
5gnj_I6e-27644706264Transcription factor MYC2
5gnj_M6e-27644706264Transcription factor MYC2
5gnj_N6e-27644706264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1631639RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462927945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816895.10.0transcription factor bHLH13-like
TrEMBLA0A3L6SNM90.0A0A3L6SNM9_PANMI; Transcription factor bHLH13-like
STRINGPavir.Ea00030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.35e-67bHLH family protein