PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462927994
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 232aa    MW: 26745.2 Da    PI: 8.3082
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462927994genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.82.7e-33201351128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel. 99 
                lpp frFhP+dee++++yL++kv ++++++  +i e+di+k                 y   + d+ky+tg r nrat++gyWkatgkd+ +++  +++ 
  462927994  20 LPPSFRFHPSDEEIITFYLTHKVLDDNFTA-IAIGETDINKQGK--------------YERERMDRKYPTGFRVNRATEAGYWKATGKDRGIYCGASSVp 104
                799************************999.78****9998542..............3334689*****************************744446 PP

        NAM 100 ..vglkktLvfykgrapkgektdWvmheyrl 128
                   g+kktLvfykgrap+ +ktdWvmheyrl
  462927994 105 vlLGMKKTLVFYKGRAPNRVKTDWVMHEYRL 135
                779**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3916141IPR003441NAC domain
PROSITE profilePS5100532.63220160IPR003441NAC domain
PfamPF023651.3E-2021135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEDQEQLQQW NSRGPDGLEL PPSFRFHPSD EEIITFYLTH KVLDDNFTAI AIGETDINKQ  60
GKYERERMDR KYPTGFRVNR ATEAGYWKAT GKDRGIYCGA SSVPVLLGMK KTLVFYKGRA  120
PNRVKTDWVM HEYRLDGKGR VPCSATSSKS NIKKTSFLSQ DPHAPRRNQS LHRCQHRRSC  180
MSFPMSTQFP VEIEDFTDYS NEFYPFLDGP FASFYSTDDM GSSVLHPLLP MF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-281813513140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462927994
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679478.14e-59protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FLJ24e-48NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1E5V4C44e-60A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRINGSi030284m4e-58(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-50NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]