PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928571
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 186aa    MW: 20131 Da    PI: 4.5443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928571genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-181968255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g
  462928571 19 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 68
               69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.62E-221976IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-311976IPR001471AP2/ERF domain
CDDcd000182.56E-311976No hitNo description
SMARTSM003801.2E-381982IPR001471AP2/ERF domain
PROSITE profilePS5103223.671976IPR001471AP2/ERF domain
PfamPF008477.1E-122068IPR001471AP2/ERF domain
PRINTSPR003673.4E-122031IPR001471AP2/ERF domain
PRINTSPR003673.4E-125878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEVVLDNVAG VAAGEVAGQY RGVRKRKWGK WVSEIREPGK KTRIWLGSFE SPEMAAVAHD  60
VAALRLRGRD ARLNFPGLPD DVRAAALEAA AQVRFTPDLV MSPAFLPPPD NGGCCGRGGG  120
GAELLHDVAW DVLLGADDLV AESPNINIWA ELAEAMLMAP PVCESRMAVN DEWAQGSLWE  180
LPVWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-161976260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-161976563ATERF1
3gcc_A2e-161976563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1196719e-67AC119671.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084F23, complete sequence.
GenBankAC1354609e-67AC135460.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0091I11, complete sequence.
GenBankAP0149679e-67AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126199e-67CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828349.16e-75ethylene-responsive transcription factor ERF022
TrEMBLA0A1E5VJX22e-80A0A1E5VJX2_9POAL; Uncharacterized protein
STRINGPavir.J26137.1.p5e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-23ERF family protein