PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928640
Common Namerht1-1
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 268aa    MW: 29142.8 Da    PI: 4.9971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928640genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.32.6e-961264123374
       GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp......gEalaVnlvlqlhrllde 216
                +QWpaLlqaLa Rp+gpps+R+Tg ++p+++++++l+++g++La+fA++++v+f+++ lva +l+dle+ +L+ +        E++aVn+v+++hrll++
  462928640   1 MQWPALLQALALRPGGPPSFRLTGAAPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGeendeePEVIAVNSVFEMHRLLAQ 100
                8***********************************************************************55444456679***************** PP

       GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.........lpreseerikvErellgreivnvvacegaerre 307
                +++le+    vL +v+ ++Pk+v+vveqea+hns+sFl+rf+++l+yys++fdsle +          ++++ +++++++++lgr+i+nvvacegaer+e
  462928640 101 PGALEK----VLGTVRAVRPKIVTVVEQEANHNSGSFLDRFTQSLHYYSTMFDSLEGGgsgqsdaasPGAAAGTDQVMSEVYLGRQICNVVACEGAERTE 196
                ******....*********************************************9886777777533334499************************** PP

       GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                rhetl +Wr+rl++aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  462928640 197 RHETLVQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAgGDGYRVEEKDGCLTLGWHTRPLIATSAWR 264
                *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.6131243IPR005202Transcription factor GRAS
PfamPF035149.1E-941264IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MQWPALLQAL ALRPGGPPSF RLTGAAPPQP DETDALQQVG WKLAQFAHTI RVDFQYRGLV  60
AATLADLEPF MLQPEGEEND EEPEVIAVNS VFEMHRLLAQ PGALEKVLGT VRAVRPKIVT  120
VVEQEANHNS GSFLDRFTQS LHYYSTMFDS LEGGGSGQSD AASPGAAAGT DQVMSEVYLG  180
RQICNVVACE GAERTERHET LVQWRNRLGR AGFEPVHLGS NAYKQASTLL ALFAGGDGYR  240
VEEKDGCLTL GWHTRPLIAT SAWRLAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-391263140377Protein SCARECROW
5b3h_D8e-391263140377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7939560.0JN793956.1 Eragrostis tef bio-material 494365 reduced height-1 (rht1-1) gene, complete cds.
GenBankJN7939570.0JN793957.1 Eragrostis tef bio-material 524442 reduced height-1 (rht1-1) gene, complete cds.
GenBankJN7939580.0JN793958.1 Eragrostis tef bio-material 494289 reduced height-1 (rht1-1) gene, complete cds.
GenBankJN7939590.0JN793959.1 Eragrostis tef bio-material 524446 reduced height-1 (rht1-1) gene, complete cds.
GenBankJN7939750.0JN793975.1 Eragrostis tef bio-material 524443 reduced height-1 (rht1-1) gene, complete cds.
GenBankJN7939760.0JN793976.1 Eragrostis tef bio-material 557456 reduced height-1 (rht1-1) gene, complete cds.
GenBankJN7939770.0JN793977.1 Eragrostis tef bio-material 524435 reduced height-1 (rht1-1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795582.10.0DELLA protein DWARF8
SwissprotQ9ST481e-179DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLH9A2080.0H9A208_ERATE; Reduced height-1
TrEMBLH9A2310.0H9A231_ERATE; Reduced height-1
STRINGPavir.Ib04357.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-126GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Smith SM,Yuan Y,Doust AN,Bennetzen JL
    Haplotype Analysis and Linkage Disequilibrium at Five Loci in Eragrostis tef.
    G3 (Bethesda), 2012. 2(3): p. 407-19
    [PMID:22413094]