PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928763
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 202aa    MW: 21729.7 Da    PI: 10.0817
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928763genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16142177134
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ k+
  462928763 142 CHHCGISAaaTPMMRRGPDGPRTLCNACGLMWANKN 177
                *****99999**********************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.0E-11641IPR010399Tify domain
PROSITE profilePS5132014.208641IPR010399Tify domain
PfamPF062003.5E-12940IPR010399Tify domain
PROSITE profilePS5101713.33467109IPR010402CCT domain
PfamPF062034.8E-1667109IPR010402CCT domain
SMARTSM004015.3E-10136190IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-10140177No hitNo description
Gene3DG3DSA:3.30.50.106.2E-14141177IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-10141177No hitNo description
PROSITE patternPS003440142169IPR000679Zinc finger, GATA-type
PfamPF003207.8E-14142177IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
VPTTVPPVSS NTLTLSFQGE VYVFDSVSPD KVQAVLLLLG GRELNPGLGA SSSSSAPYSK  60
RLNFPHRVAS LMRFREKRKE RNFDKKIRYT VRKEVALRMQ RNRGQFTSSK PKPDEAAAEL  120
TTADGSPNWG ALEGRPPSAA ECHHCGISAA ATPMMRRGPD GPRTLCNACG LMWANKNGNA  180
IAAPGVEQEN PAAAMANGHE LS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928763
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753285.11e-121GATA transcription factor 20
SwissprotQ5Z4U51e-119GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0A9EJS61e-122A0A0A9EJS6_ARUDO; Uncharacterized protein
STRINGSi006750m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-70ZIM-LIKE 2