PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928772
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 212aa    MW: 23176.2 Da    PI: 8.2899
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928772genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1872126256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++++Lt rqV vWFqNrRa+ k
  462928772  72 RKKLRLTKEQSTLLEDTFHAHNILSHAQKHELARQVNLTPRQVEVWFQNRRARTK 126
                788899***********************************************98 PP
2HD-ZIP_I/II116.91.1e-3772161190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq++lLE++F++++ L++ +K+elar+++l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l++en+rL+ e  eL+++
    462928772  72 RKKLRLTKEQSTLLEDTFHAHNILSHAQKHELARQVNLTPRQVEVWFQNRRARTKLKQTEVDCELLKRCCESLTDENQRLKLELMELQQS 161
                  69*************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1957127IPR009057Homeodomain-like
SuperFamilySSF466896.84E-2061129IPR009057Homeodomain-like
PROSITE profilePS5007117.55668128IPR001356Homeobox domain
SMARTSM003892.7E-1570132IPR001356Homeobox domain
CDDcd000862.03E-1472129No hitNo description
PfamPF000464.2E-1672126IPR001356Homeobox domain
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PfamPF021833.0E-9128159IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.8E-15128171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MYSPTCMEEE HLGAWLGLGI GGGGCALKKG RGDHKQAVTT EKVARKKLKI IDDSRSSRGP  60
SPGEEEDDGS TRKKLRLTKE QSTLLEDTFH AHNILSHAQK HELARQVNLT PRQVEVWFQN  120
RRARTKLKQT EVDCELLKRC CESLTDENQR LKLELMELQQ SAAAAAGSAA AAAGLYVQFP  180
RAAAEAVSVC PSCEKITMTS GGETSKSSSY SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076TRKKLRL
2120128RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928772
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813457.14e-78homeobox-leucine zipper protein HOX18-like
SwissprotQ5Z6F65e-62HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A2S3HGQ79e-77A0A2S3HGQ7_9POAL; Uncharacterized protein
STRINGSi007238m8e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-46homeobox from Arabidopsis thaliana