PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928857
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 393aa    MW: 43044.4 Da    PI: 9.6366
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928857genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.8e-06365389123
                EEETTTTEEESSHHHHHHHHHH..T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                y+C+ C+ksF ++  L+ H ++  H
  462928857 365 YVCKSCNKSFYSPVALEIHRKLkkH 389
                9******************997555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.11E-5364389No hitNo description
PROSITE profilePS5015710.803365393IPR007087Zinc finger, C2H2
PROSITE patternPS000280367389IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGFCLSKVQA STDISRERLL PCLAYLFGHF LISALASEKG SAAERSGTEF AASHGTERKA  60
LGALVTDMTE FARVVVKPGE TLKCDPGELY CAVSQIALEG GKGNENVEVF VKVNGNILLM  120
ATLSAFRHPQ YATELVFEKE FELLHTSKTR NVSVIGYRFS NGVVVKPGET LKCDPGELYC  180
AVSQIALEGG KGNENVEVFV KVNGNILLMA TLSAFRHPQY ATELVFEKEF ELLHTSKTRN  240
VSVIGYRFSN DDESKEAKIC SEKLAAPRRA AVQSSKPKVT LEKRLNPGKL NVACRSDDGE  300
GAKGKNRLVE TPLKTHMEKK AKKTTSFTGK NIASSTGKER DHVHVATPRP LEQVKRSPFS  360
ISPSYVCKSC NKSFYSPVAL EIHRKLKKHG AGK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928857
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305986.12e-55histone deacetylase HDT2 isoform X2
TrEMBLA0A0A9GI376e-68A0A0A9GI37_ARUDO; Uncharacterized protein
STRINGSi002175m2e-50(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.18e-15histone deacetylase 2C