PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462928863

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 339aa MW: 36557.9 Da PI: 4.4971

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462928863	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	313	334	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C+ C+k+F++ L +H++ 462928863 313 HSCKTCSKTFNSAGALDSHQKA 334 79******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.06E-7	301	337	No hit	No description
PROSITE profile	PS50157	10.699	313	339	IPR007087	Zinc finger, C2H2
Pfam	PF12874	6.2E-5	314	337	No hit	No description
PROSITE pattern	PS00028	0	315	337	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEFWGQEVKP GASVTCEVGD GFVVHLSQAA LGETKKGTES VVVYVNVDDK KLVIGTLSAD 60 KHPQFTCDLI FDKDFEISHS SKTTSVFLCG YESILPDMFE YPYDIFRLFS NQLKIHCFDN 120 ILSLNRCPAL STSDSGEDED EELETDEIPV KINVTEKPAA KGGEKDTKDD DKKSDGSETS 180 SGTDGISDSD SSDEDDSMSE DDSSDGDDLS SGTDDLDSDD SEEDEDEETP VKAENGKKRA 240 AETALKTPAS DKKTKIATPS GKKTGDKKDV HVATPHPAKK GPKTPADSKP KEKAPKTPAD 300 SKTKEKSPKS GSHSCKTCSK TFNSAGALDS HQKAKKHEA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462928863

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682081.1	4e-83	histone deacetylase HDT2 isoform X1
TrEMBL	A0A0A9EU22	1e-102	A0A0A9EU22_ARUDO; Hda106
STRING	Si004270m	4e-79	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2204	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	1e-25	histone deacetylase 3