PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928902
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family SBP
Protein Properties Length: 174aa    MW: 19449.4 Da    PI: 8.3474
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928902genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP68.81.1e-212394178
               EE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
               rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q+
  462928902  2 RFCQQCSRFHLLAEFDEAKRSCRKRLDGHNRRRRKPQP 39
               9**********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-11124IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.349137IPR004333Transcription factor, SBP-box
PfamPF031102.6E-14136IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-19242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MRFCQQCSRF HLLAEFDEAK RSCRKRLDGH NRRRRKPQPD NMNSGSFMTS QQGTRFSSFV  60
APRPEPSWSG IIKSEDNSSY YTHQVLSNRP HFAGSTSTYS KEGRRFPFLQ DGDQASSGVV  120
ATAGFTCPSM ESEQLNTVLV PSSDGHEMNY HGIFHVGGEG SSDGTSPSLP FSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-132365084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11936KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928902
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803089.19e-70squamosa promoter-binding-like protein 18 isoform X2
SwissprotQ0J0K13e-52SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A2T7EUD92e-68A0A2T7EUD9_9POAL; Uncharacterized protein
TrEMBLA0A2T8KRA52e-68A0A2T8KRA5_9POAL; Uncharacterized protein
STRINGBRADI4G34667.17e-66(Brachypodium distachyon)
STRINGPavir.J30793.1.p6e-66(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-23SBP family protein