PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462929031
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 115aa    MW: 12196.6 Da    PI: 10.7295
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462929031genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.2e-1814103147
                      TSSS-HHHHHHHHHHHHHTTTT............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg............................................tWktIartmgkgRtlkqcksrwqky 47 
                      +g+WT+eEd++lv ++k +Gg+                                             W++Ia +++ gRt++++k++w+++
        462929031  14 KGAWTKEEDDRLVAYIKAHGGPacsaaaraaacggsttsartssaatsprrrtsssssstacsatsKWSLIAGRLP-GRTDNEIKNYWNTH 103
                      79**************************************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.2019108IPR017930Myb domain
SMARTSM007179.0E-1413106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-221534IPR009057Homeodomain-like
CDDcd001672.19E-716104No hitNo description
SuperFamilySSF466891.72E-878112IPR009057Homeodomain-like
PfamPF002493.7E-779103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2280105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLVAYIK AHGGPACSAA ARAAACGGST TSARTSSAAT  60
SPRRRTSSSS SSTACSATSK WSLIAGRLPG RTDNEIKNYW NTHIRRKLLS RGIDP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462929031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5609785e-92FJ560978.1 Saccharum hybrid cultivar Co 86032 MYB transcription factor (MYB6) pseudogene mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660900.15e-41PREDICTED: myb-related protein Hv1-like
RefseqXP_008653574.12e-41myb-related protein Hv1
RefseqXP_015696847.15e-41PREDICTED: myb-related protein Hv1-like
RefseqXP_020396571.12e-41myb-related protein Hv1
SwissprotP813937e-42MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A060CX055e-40A0A060CX05_MAIZE; MYB transcription factor (Fragment)
TrEMBLA0A0B0NF254e-40A0A0B0NF25_GOSAR; Myb-related protein
TrEMBLA0A0C6WCK33e-40A0A0C6WCK3_9POAL; ScMYB4 protein
TrEMBLA0A3L6DZY85e-40A0A3L6DZY8_MAIZE; Myb-related protein Hv1
STRINGOB09G24400.12e-40(Oryza brachyantha)
STRINGGRMZM2G000818_P019e-41(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35515.11e-26high response to osmotic stress 10
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]