PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462929181

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 148aa MW: 16116.1 Da PI: 10.2781

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462929181	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.9	4.4e-33	69	127	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ 462929181 69 LDDGYRWRKYGQKAVKNSAHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 127 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-33	55	127	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-29	62	128	IPR003657	WRKY domain
PROSITE profile	PS50811	28.449	64	129	IPR003657	WRKY domain
SMART	SM00774	2.0E-38	69	128	IPR003657	WRKY domain
Pfam	PF03106	2.4E-26	70	127	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSPAATVPPG LQEAVRVDQS GENDGGGEAG GSGSEKAGKG GGAGRSPSGK KKVSRPRFAF 60 QTRSVNDILD DGYRWRKYGQ KAVKNSAHPR SYYRCTHHTC NVKKQVQRLA KDTSIVVTTY 120 EGVHNHPCEK LMEALSPILK QLQFLSQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-25	60	126	8	74	Probable WRKY transcription factor 4
2lex_A	9e-25	60	126	8	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00539	DAP	Transfer from AT5G41570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462929181

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108909	1e-115	AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence.
GenBank	AY341845	1e-115	AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds.
GenBank	AY870607	1e-115	AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969857.1	3e-80	probable WRKY transcription factor 56
Swissprot	Q9FFS3	2e-57	WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBL	A0A1E5UIW3	8e-83	A0A1E5UIW3_9POAL; Putative WRKY transcription factor 24
STRING	Si002751m	1e-79	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	2e-57	WRKY DNA-binding protein 24