PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462929447
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 90aa    MW: 10432.1 Da    PI: 9.5327
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462929447genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+  ++++G  +W++I++  g++R++k+c++rw +yl
        462929447 16 KGLWSPEEDERLASHIARFGVSCWSSIPELAGLHRCGKSCRLRWMNYL 63
                     678*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-24866IPR009057Homeodomain-like
PROSITE profilePS5129423.1571167IPR017930Myb domain
SMARTSM007178.7E-131565IPR001005SANT/Myb domain
PfamPF002491.0E-151663IPR001005SANT/Myb domain
SuperFamilySSF466893.23E-211890IPR009057Homeodomain-like
CDDcd001676.01E-101963No hitNo description
PROSITE profilePS500904.1246490IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-86790IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGRVHPCCSE EKKLRKGLWS PEEDERLASH IARFGVSCWS SIPELAGLHR CGKSCRLRWM  60
NYLRPDLKRG RFSQQEEDLI IGLHKALGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-16149025100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462929447
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675683.13e-57myb-related protein Hv33
RefseqXP_025817318.12e-57myb-related protein Hv33-like
SwissprotQ8LPH63e-42MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A1E5VYS43e-57A0A1E5VYS4_9POAL; Transcription factor MYB86
STRINGPavir.Eb00460.1.p8e-57(Panicum virgatum)
STRINGGRMZM2G052377_P011e-56(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-44myb domain protein 86