PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462930051
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 101aa    MW: 10913.2 Da    PI: 9.2244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462930051genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-051133123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F ++  L  H++ H
  462930051 11 FTCTYCDKKFYSSQALGGHQNAH 33
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.96E-71038No hitNo description
PROSITE profilePS5015711.3851138IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.0011136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MAPEPEPPGY FTCTYCDKKF YSSQALGGHQ NAHKFERSVA KRARELAAAR RAGQGGEEAR  60
RGKEMGIAAR GSGASSSQQI RLSPEASGRD LTDELDLSLK L
Cis-element ? help Back to Top
SourceLink
PlantRegMap462930051
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687002e-47EU968700.1 Zea mays clone 323547 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956891.14e-39zinc finger protein 2
TrEMBLA0A2T7ESI44e-38A0A2T7ESI4_9POAL; Uncharacterized protein
STRINGPavir.Bb02239.1.p5e-39(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-13zinc finger protein 2