PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462930158
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 900aa    MW: 99500.6 Da    PI: 6.3916
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462930158genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-23129230199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F   ++++ +l+
  462930158 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI--WNDNNQLL 224
                99*****************************85545444..8************************************************..7777788* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  462930158 225 LGIRRA 230
                **9997 PP
2Auxin_resp1187.8e-39255338183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+ rWpnS+Wrs+k
   462930158 255 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSERWPNSHWRSVK 338
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-47116258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-42120244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-21128229No hitNo description
PROSITE profilePS5086312.506129231IPR003340B3 DNA binding domain
SMARTSM010199.3E-25129231IPR003340B3 DNA binding domain
PfamPF023622.0E-21129230IPR003340B3 DNA binding domain
PfamPF065073.0E-34255338IPR010525Auxin response factor
SuperFamilySSF542779.16E-7767842No hitNo description
PROSITE profilePS5174523.091767851IPR000270PB1 domain
PfamPF023096.4E-5813852IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MQLSPSKIAD ASPESEGEQR CLNSELWHAC AGPLVSLPVV GSRVVYFPQG HSEQVAASTN  60
KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETEEVYAQMT LQPLSPEEQK EPFLPIELGA  120
ASKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPVQELI ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA SRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFII PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDSERWP NSHWRSVKVG WDESTAGEKQ PRVSLWEIEP  360
LTTFPMYPTA FPLRLKRPWA SGLPSMHGMF NGGKSDDFAR YSSLMWLRDG NRGAQSLNFQ  420
GLGVSPWLQP RMDYSLLGLK PDTYKQMAAA ALQEIRAGDH LKQTSALLPI QQTQNLNGGL  480
NPLYGNPVLQ QMQYQSQQSP LQDVQRGYNQ NTGSSGFLQN QLQQLQLHNS PQMQKEQEPP  540
PQQQTQQVLP QQSHQEMQQH FSSGCHGITS GMPECGSVSQ PQSSLHPGSS FYQQKIFEGN  600
SGPGFHMHNS THNFSSNETS YMLSLPRNGQ LMASEGWPSK RLAVDPLVSL DAQSVQPKHE  660
KVDHQTNMPH ISGALPPLSG RDSSNGEACG ASVQSHLLSS PFSIHDGTTV RSGGVGSGTD  720
SITIASLRYN DMNLLTESSM RTSGCLGESG TFNSLDDVCG VNAPQGGTFV KVYKSGSLGR  780
SLDITKFSSY YELRSELERL FGLEGQLEDP VRSGWQLVFV DRENDILLVG DDPWQEFVNS  840
VWCIKILSPQ DVQQMVRDGD GLLSAAGGRV LQGNVCDDYS ANHDMQNLTG NIAPVVQLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602235951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462930158
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963222.10.0auxin response factor 25
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLA0A1E5UNI10.0A0A1E5UNI1_9POAL; Auxin response factor
STRINGPavir.Ca02838.1.p0.0(Panicum virgatum)
STRINGSi021157m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]