PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462930537
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 223aa    MW: 24246.2 Da    PI: 8.6556
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462930537genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.8e-18131209790
                .-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3   7 psdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                p+d++++  + lp  f++++g++  ++ +++l++  +s+ sW+v++    ++++ y l++GWk+F+++n++kegD+++Fk ++   +
  462930537 131 PPDSMEK--MALPMAFCKAIGLPD-QTCMIMLKTtlSSSDSWQVRV--LPYKNTsYQLGSGWKSFCRENKIKEGDVCTFKIVE---T 209
                6666665..79*********8875.55688888855677*******..444444499***********************654...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.33497IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-93497IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-83898IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.6414597IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-19121218IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.943123220IPR003340B3 DNA binding domain
CDDcd100174.85E-16124205No hitNo description
SuperFamilySSF1019361.29E-18124218IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-9125219IPR003340B3 DNA binding domain
PfamPF023625.6E-16131216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSSASGSHCP TSRKNLRVLL PFSCRGLLAD DVGAGEALIV GPFAKVWPVE VARDGDGAFM  60
GRGWSEYAAA CGVGAGWLVI LRHRGRGVLT AKAFDASCSI RELGTPIPHP VEAAMSSKDA  120
PLKPQFICVL PPDSMEKMAL PMAFCKAIGL PDQTCMIMLK TTLSSSDSWQ VRVLPYKNTS  180
YQLGSGWKSF CRENKIKEGD VCTFKIVETR LWHVVVERQQ ALT
Cis-element ? help Back to Top
SourceLink
PlantRegMap462930537
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684232.13e-48putative B3 domain-containing protein Os04g0347400
TrEMBLA0A0A9S1937e-52A0A0A9S193_ARUDO; Uncharacterized protein
STRINGSi012530m9e-49(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.15e-13B3 family protein