PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462930546
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 351aa    MW: 38499.4 Da    PI: 9.1063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462930546genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.2e-131151743699
                EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++ ++ g++W+v +  ++ +++ +l++GW eF  a+g+ +g fvv++++g  ++ l+vk+f++
  462930546 115 ARVVSPFGKVWRVDV--ERDGEGAFLGRGWPEFLAAHGVGVGWFVVLRHEG--GGALTVKAFDT 174
                5788999********..*******************************765..7778***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.005615175IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-81799IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-75399IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.92266120IPR003340B3 DNA binding domain
CDDcd100171.33E-7114173No hitNo description
SuperFamilySSF1019365.49E-12115177IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-10115174IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-11118176IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.756122175IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-12197290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-14198295IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.134199290IPR003340B3 DNA binding domain
CDDcd100171.21E-10200287No hitNo description
SMARTSM010195.3E-4202290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MASSGDRVAV VRAKQLKVLM PPYLHKLRIS DELAGCFDNA AASESGGCGG DGPHGGATAL  60
VVSPFGKVWR VEVGRDGGGA FLGRGWPEFV AAHDIGVGWS SPAASAPSTA RALVARVVSP  120
FGKVWRVDVE RDGEGAFLGR GWPEFLAAHG VGVGWFVVLR HEGGGALTVK AFDTSFCIRE  180
FVAPAAVLAP RSSKEVSHKP QFIRVIHKDF MEKMRIPSKF LKHYVSEGYL NSPVVVLFSP  240
LGKLWPIELE KKQLSCWPQF LAFHGISEGD VLLFRYEGNM LFKFKVFGLD GVQKDLKNKK  300
TGIQQPTDIL KQQESPCRTR KRKSNSEESI FVCEILPLCW VPESLCHHTQ D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318323TRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462930546
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977888.11e-100putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS754e-71Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLK3YCY52e-98K3YCY5_SETIT; Uncharacterized protein
STRINGSi012086m3e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.15e-09B3 family protein