PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462930549
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 783aa    MW: 86401.3 Da    PI: 9.4038
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462930549genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-101602421398
                TT-EE--HHH.HTT..---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  13 sgrlvlpkkfaeeh..ggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +  + +p +f++++  +  ++  +   ++  + g++W++k+  + +++ +++t+ W +F k ng+    +++++++g++ f  +vkvf+
  462930549 160 TEKMLIPPEFVQRYmpK--ENlDNGVAVVLGPLGKVWRIKV--EINQSDVLFTDRWAQFLKFNGITKDNVLLLRYEGNMVF--TVKVFE 242
                45699*********652..331334677889**********..999999********************************..999987 PP
2B332.21.9e-104185001398
                TT-EE--HHH.HTT..---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  13 sgrlvlpkkfaeeh..ggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +  + +p +f++++  +  ++  +   ++  + g++W++k+  + +++ +++t+ W +F k ng+    +++++++g++ f  +vkvf+
  462930549 418 TEKMLIPPEFVQRYmpK--ENlDNGVAVVLGPLGKVWRIKV--EINQSDVLFTDRWAQFLKFNGITKDNVLLLRYEGNMVF--TVKVFE 500
                45699*********652..331334677889**********..999999********************************..999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.04633122IPR003340B3 DNA binding domain
PROSITE profilePS508637.5749122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-760124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-960124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-17144246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-17146246IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.588148244IPR003340B3 DNA binding domain
CDDcd100173.10E-11149241No hitNo description
SMARTSM010198.6E-8151244IPR003340B3 DNA binding domain
PfamPF023623.4E-8160242IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-6256330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-7257330IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-17402504IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-17404504IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.588406502IPR003340B3 DNA binding domain
CDDcd100173.10E-11407499No hitNo description
SMARTSM010198.6E-8409502IPR003340B3 DNA binding domain
PfamPF023623.4E-8418500IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-7514588IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-7515588IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-4635710IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-6637710IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MSSPTSGDHV SASHKQLRVL LPFSPGSLVS PTPSSSHRRA DAGDSTPRIP DELADDVGAG  60
EALVVGPFAK VWPVEVGRDG DGAFLGHGWP EYAAACGVGG GWLLVLRHHG RGVLTVKAFD  120
NSGCVRGLGA PIPHAVEATM SSNDAPRRPQ FIGLLLPDST EKMLIPPEFV QRYMPKENLD  180
NGVAVVLGPL GKVWRIKVEI NQSDVLFTDR WAQFLKFNGI TKDNVLLLRY EGNMVFTVKV  240
FEPNGCQRES KHKDIRIQQS ELKRFMALPT AFCDAIALRE SCMITLKTSV NSAQYWPVHG  300
VSCKNSSYLL VFCQENSLKE GDACTFNVVE TINTDNIPTQ KLNPSASGGK RKSKNMWPVT  360
ERSKKPKGSL NSLKKASKKS GCVRGLGAPI PHAVEATMSS NDAPRRPQFI GLLLPDSTEK  420
MLIPPEFVQR YMPKENLDNG VAVVLGPLGK VWRIKVEINQ SDVLFTDRWA QFLKFNGITK  480
DNVLLLRYEG NMVFTVKVFE PNGCQRESKH KDIRIQQSEL KRFMALPTAF CDAIALRESC  540
MITLKTSVNS AQYWPVHGVS CKNSSYLLVF CQENSLKEGD ACTFNVVETI NTDNIPTQKL  600
NPSASGGKRK SKNMWPVTER SKKPKGSLNS LKKASKKRGR SSLPASFCQA IGIRKTCTVT  660
LKTSLSSSKS WQACIHPYKN SSHHENSLKV GDVCTINIVE TTLWHVVIAR RRLKSVYIRD  720
DASIEKAIYP VLCPWADGSS GQSLLTLNDD MPEPGFYNFE GADVTFLDLK LFHPDPSCLS  780
GIH
Cis-element ? help Back to Top
SourceLink
PlantRegMap462930549
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825227.11e-108putative B3 domain-containing protein Os04g0347400
TrEMBLA0A0A9S1931e-136A0A0A9S193_ARUDO; Uncharacterized protein
STRINGPavir.Ga02294.1.p4e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-09B3 family protein