PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462931217
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 569aa    MW: 61373.3 Da    PI: 7.8581
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462931217genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.3e-28264313252
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEE CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitY 52 
                dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers+ d++++ei+ 
  462931217 264 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSQ-DGQITEIVA 313
                8****************************************.******985 PP
2WRKY88.74.8e-28404455152
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEE CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitY 52 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+Cpv+k+ver+++d ++v++t 
  462931217 404 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTANCPVRKHVERASHDLRAVITTA 455
                59********************************************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-23255312IPR003657WRKY domain
PROSITE profilePS5081120.403258304IPR003657WRKY domain
SuperFamilySSF1182907.98E-21259310IPR003657WRKY domain
SMARTSM007743.6E-25263314IPR003657WRKY domain
PfamPF031062.1E-20264312IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-30389454IPR003657WRKY domain
SuperFamilySSF1182906.67E-24396455IPR003657WRKY domain
PROSITE profilePS5081131.02399464IPR003657WRKY domain
SMARTSM007744.4E-27404457IPR003657WRKY domain
PfamPF031061.1E-20405454IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
STSSPSSFSR SNCLPPPCQP GRTRRTDTAT ARPVVVEGAV AAASLLRSMT TSSSGSIEAP  60
ANSRPGSFSF ASTSFTDMLG GSAAAAGGAS RYKAMTPPSL PLSPAPVSPS SFFNIPGGLN  120
PADFLDSPIL LTSSLFPSPT VGAFASQQFS WMQTQAVEQD VANKEEQRQS YPDFSFQTAP  180
TSQEAVRTTT TTTFQPPIQP ASLGEEAYPS QQQQPWGYQQ QQPGMETNQA SFSAPFQATS  240
SDATAMAPHA AQGYSQQSQR RSSDDGYNWR KYGQKQVKGS ENPRSYYKCT FPNCPTKKKV  300
ERSQDGQITE IVARTTTPSR RTGAAAQLLL QGDASEHSFG GTPVGTPENS SASFGDGGEE  360
FDEDEPDSKR WRKESEGEGM SMAGNRTVRE PRVVVQTMSD IDILDDGYRW RKYGQKVVKG  420
NPNPRSYYKC TTANCPVRKH VERASHDLRA VITTASTTNR PAPPPPPADN GAGSSGHHYL  480
GVRPPPAMAY QNSGAAGQQQ QQQYAHGFSG GQGSFGLQQG AFGGFSGFDN PMGSYMSQHQ  540
QQQRQNDAMH ASRAKEEPRE DMFFQQTMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-27395454867Probable WRKY transcription factor 4
2lex_A6e-27395454867Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462931217
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071991e-108AK107199.1 Oryza sativa Japonica Group cDNA clone:002-125-B01, full insert sequence.
GenBankAY3418491e-108AY341849.1 Oryza sativa (japonica cultivar-group) WRKY8 mRNA, complete cds.
GenBankAY6769251e-108AY676925.1 Oryza sativa (indica cultivar-group) transcription factor WRKY24 (WRKY24) mRNA, complete cds.
GenBankAY8706081e-108AY870608.1 Oryza sativa (japonica cultivar-group) WRKY24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970421.30.0WRKY transcription factor WRKY24
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1E5WCJ00.0A0A1E5WCJ0_9POAL; Putative WRKY transcription factor 33
STRINGSi000906m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.14e-57WRKY family protein
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]