PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462931238
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 204aa    MW: 23109.3 Da    PI: 10.7179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462931238genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-132475155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +r +h ++Er+RR+r+N+ ++eLr l+P +   ++++   a+i+  A++++k+L+
  462931238 24 QRLNHIAVERNRRRRMNEYLAELRALMPRS---YARRGAQASIVGGAIDFVKELE 75
               699***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-162292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-62279No hitNo description
PROSITE profilePS5088815.1422374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-112475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-142490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-92980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
PRRRRRRRPA LKEARSVEDD AESQRLNHIA VERNRRRRMN EYLAELRALM PRSYARRGAQ  60
ASIVGGAIDF VKELEHHLQS LHAENGEKRR CHAAAVGHRT ESFASFFTFP QYSVSAAADI  120
DEASGTRPGV ADVEAAVSDG HAPVEVPXXX XXXXXXXXAL HLNVTTTSGQ MVFYTITLRV  180
RNLLQHQHVA RRPAERLAHH QCTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
117RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462931238
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813203.16e-52transcription factor bHLH96-like
TrEMBLA0A3L6S4D45e-53A0A3L6S4D4_PANMI; Transcription factor bHLH94-like
STRINGPavir.Db01842.1.p1e-52(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.13e-36bHLH family protein